RetrogeneDB ID: | retro_nleu_2067 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397326.1:4638170..4638857(+) | ||
Located in intron of: | ENSNLEG00000006047 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSNLEG00000000656 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.74 % |
Parental protein coverage: | 81.85 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELK |
ESMK.V.G.DVELTV.ERNL.SVA.KN.IGA.RASW.IIS.IEQ.EENKGGED...MI..Y.QMVETEL. | |
Retrocopy | ESMKTVTGTDVELTVGERNLPSVACKNGIGATRASWIIISCIEQEEENKGGEDR*GMIWGYWQMVETELT |
Parental | LICCDILDVLDKHLIPAANTGESKVFYY-KMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL |
.ICCDILDVLDK..IPAANTGESKVFYY.KMKGDYHRYLAEFAT.NDRKEAAENSLVA..A..DIA.TEL | |
Retrocopy | -ICCDILDVLDKPCIPAANTGESKVFYY>KMKGDYHRYLAEFATENDRKEAAENSLVADIAVNDIALTEL |
Parental | PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA-IAELDTLSEESYKDSTLIMQLLRDNLTLWT |
PP.HPIRLGLALN.S.FY.EILNSPD.ACRLAKAA.D.A.IAELDTLS.ES.KDSTL.MQL..DNLTLWT | |
Retrocopy | PPSHPIRLGLALNCSIFY*EILNSPDHACRLAKAALDNA<IAELDTLS*ESCKDSTLTMQLFHDNLTLWT |
Parental | SDMQGDGEEQNKEVLQDVEDEN |
.DMQG.GEE.NKE.LQDVED.. | |
Retrocopy | LDMQGNGEE*NKEALQDVEDSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005664 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012056 | 2 retrocopies | |
Homo sapiens | ENSG00000108953 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010174 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000656 | 2 retrocopies |
retro_nleu_2067 , retro_nleu_2868,
|
Nomascus leucogenys | ENSNLEG00000003220 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006643 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000006155 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007769 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000008521 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005084 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010288 | 3 retrocopies |