RetrogeneDB ID: | retro_btau_372 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:40062018..40062648(-) | ||
Located in intron of: | ENSBTAG00000005697 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSBTAG00000005664 | ||
Aliases: | None | ||
Description: | 14-3-3 protein epsilon [Source:UniProtKB/Swiss-Prot;Acc:P62261] |
Percent Identity: | 74.3 % |
Parental protein coverage: | 83.14 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKG |
EDLVYQA.LA..AER.DE.V.SMKK.AG..V.LTVE.RNL.SVA..N..GA.RAS.R.ISS.EQK.EN.. | |
Retrocopy | EDLVYQAELAQPAER*DETVDSMKKKAGLNVDLTVE*RNLSSVACENATGAKRAS*RTISSTEQKKENEV |
Parental | GEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEA |
GE.KLKMIREY.QM.....KLICCDILDVL.K.LIPAANTG.SK..YYKMKGDYHRYLAEFA.GN..KEA | |
Retrocopy | GEGKLKMIREYWQMFGA--KLICCDILDVLNKPLIPAANTGKSKISYYKMKGDYHRYLAEFASGNEKKEA |
Parental | AENSLVA-YKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNS-PDRACRLAKAAFDDAIAELDTLSEE |
.EN.LVA..KA.SDIA.TELP.THP..LGLALNFSVFYYEILNS...RACRLAKAAFDDA..ELDTLSE. | |
Retrocopy | TENNLVA<FKAPSDIAVTELPLTHPNCLGLALNFSVFYYEILNS>SNRACRLAKAAFDDAVEELDTLSE* |
Parental | SYKD |
.YK. | |
Retrocopy | NYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 230 .27 RPM |
ERP005899_muscle | 0 .00 RPM | 301 .95 RPM |
SRP017611_brain | 0 .00 RPM | 572 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .05 RPM |
SRP017611_liver | 0 .00 RPM | 177 .29 RPM |
SRP030211_testis | 0 .01 RPM | 287 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000236 | 4 retrocopies | |
Bos taurus | ENSBTAG00000002108 | 2 retrocopies | |
Bos taurus | ENSBTAG00000005664 | 3 retrocopies |
retro_btau_1485, retro_btau_372 , retro_btau_954,
|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012056 | 2 retrocopies | |
Homo sapiens | ENSG00000108953 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010174 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000656 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006155 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007769 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000008521 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005084 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010288 | 3 retrocopies |