Parental gene:

YWHAE, ENSBTAG00000005664

Aliases:None
Description:14-3-3 protein epsilon [Source:UniProtKB/Swiss-Prot;Acc:P62261]
Organism:Cow (Bos taurus)
Coordinates:19:23086307..23121103(-)


>ENSBTAG00000005664
ATGGATGATCGGGAGGATCTGGTGTACCAGGCGAAGCTGGCCGAGCAGGCTGAGCGATACGACGAAATGGTGGAGTCAAT
GAAGAAAGTAGCAGGGATGGATGTGGAGTTGACAGTTGAAGAAAGAAACCTCCTATCTGTTGCATATAAAAATGTGATTG
GAGCTAGAAGAGCTTCCTGGAGAATAATCAGCAGCATTGAACAGAAAGAAGAAAACAAGGGAGGAGAAGACAAACTAAAA
ATGATTCGGGAATATCGGCAAATGGTTGAGACTGAGCTAAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACA
CCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTTTCTATTATAAAATGAAAGGGGACTACCACAGGTATCTGGCTG
AATTTGCCACAGGGAATGACAGGAAGGAGGCTGCGGAGAACAGCCTAGTGGCTTATAAAGCTGCTAGTGATATTGCAATG
ACAGAACTTCCACCAACACATCCCATTCGCTTAGGTCTTGCTCTCAACTTTTCTGTATTCTACTATGAAATTCTTAATTC
CCCTGACCGTGCCTGCAGGTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGACACGCTGAGTGAAGAAAGCT
ATAAGGACTCTACACTTATCATGCAGTTGTTACGTGATAATCTGACACTATGGACTTCAGACATGCAGGGTGATGGTGAA
GAGCAGAATAAAGAAGCGCTGCAGGATGTGGAAGATGAAAATCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 572 .86 RPM
SRP017611_kidney 411 .05 RPM
SRP017611_liver 177 .29 RPM
ERP005899_muscle 301 .95 RPM
ERP005899_liver 230 .27 RPM
SRP030211_testis 287 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000000236 other_paralog 4 retrogenes
retro_btau_1482, retro_btau_635, retro_btau_68, retro_btau_910,
Bos taurus ENSBTAG00000002108 other_paralog 2 retrogenes
retro_btau_1180, retro_btau_86,
Choloepus hoffmanni ENSCHOG00000010861 ortholog_one2one 2 retrogenes
retro_chof_1912, retro_chof_905,
Ciona intestinalis ENSCING00000023856 ortholog_one2many 1 retrogene
retro_cint_15,
Ciona savignyi ENSCSAVG00000011723 ortholog_one2one 2 retrogenes
retro_csav_13, retro_csav_9,
Echinops telfairi ENSETEG00000012056 ortholog_one2one 2 retrogenes
retro_etel_1762, retro_etel_738,
Homo sapiens ENSG00000108953 ortholog_one2one 4 retrogenes
retro_hsap_2324, retro_hsap_3739, retro_hsap_3851, retro_hsap_4703,
Gorilla gorilla ENSGGOG00000016840 ortholog_one2one 1 retrogene
retro_ggor_2596,
Monodelphis domestica ENSMODG00000010174 ortholog_one2one 2 retrogenes
retro_mdom_1567, retro_mdom_744,
Nomascus leucogenys ENSNLEG00000000656 ortholog_one2one 2 retrogenes
retro_nleu_2067, retro_nleu_2868,
Otolemur garnettii ENSOGAG00000006155 ortholog_one2one 2 retrogenes
retro_ogar_1003, retro_ogar_2144,
Pongo abelii ENSPPYG00000007769 ortholog_one2one 4 retrogenes
retro_pabe_1644, retro_pabe_1646, retro_pabe_2107, retro_pabe_3219,
Pan troglodytes ENSPTRG00000008521 ortholog_one2one 5 retrogenes
retro_ptro_1697, retro_ptro_2538, retro_ptro_2624, retro_ptro_2626, retro_ptro_2993,
Ictidomys tridecemlineatus ENSSTOG00000005084 ortholog_one2one 1 retrogene
retro_itri_1175,
Vicugna pacos ENSVPAG00000010288 ortholog_one2one 3 retrogenes
retro_vpac_230, retro_vpac_411, retro_vpac_559,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_372 74.30 83.14
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2. retro_btau_954 75.71 68.63
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3. retro_btau_1485 91.41 50.20
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Download FASTA sequences of all ENSBTAG00000005664 retrocopies