RetrogeneDB ID: | retro_vpac_559 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_4486:19481..19842(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSVPAG00000010288 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 73.39 % |
Parental protein coverage: | 52.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MVESMKKVAGMDVELTVEERNLLSVAYKNVIGAR-RASWRIISSIEQKEENKGGEDKLKMIREYRQMVET |
MVE..KKVA.MDVELT.EERNL.SVA.K.VIGA..R.SWRIISS.EQKEENKGG.DKLKMI..Y..MVE. | |
Retrocopy | MVEAIKKVAEMDVELTAEERNL-SVACKTVIGAK>RVSWRIISSTEQKEENKGGVDKLKMIQKYWPMVEI |
Parental | ELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAA |
EL..I.CD.LDVLDKH.IPA.NTGESKVFY.K.KGD...YLAEFATG.....AA | |
Retrocopy | EL--IRCDSLDVLDKHFIPAVNTGESKVFY*KIKGD*PSYLAEFATGRRLQRAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005664 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012056 | 2 retrocopies | |
Homo sapiens | ENSG00000108953 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010174 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000656 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006155 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007769 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000008521 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005084 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005023 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005865 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010288 | 3 retrocopies |
retro_vpac_230, retro_vpac_411, retro_vpac_559 ,
|