RetrogeneDB ID:

retro_nleu_487

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397266.1:19097488..19098057(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAZ
Ensembl ID:ENSNLEG00000003220
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_487
ATGGATAAAAATGAGCTGGTTGAGAAGGCCAAACTGGCCCAGTAGGCTGAGAGATATGATGACATGGCAGCCTGCATGAA
ATCTGTTAACTGAGCAAGGAGCTGAAATTGTCCAATGAGGAGAGGAACCTTCTCTCAGTTGCTTCTAAAAATGTTGTAGG
AGCCTATAGGTCATCTTAGAGGGTTGTCTCAAGTATTGAACAAAAGACAGAAGGTGCTGAGAGAAAACAGCAGGTGGCTC
GAGAATACAGAGAGAAAATTCAGACACAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTTGATC
CCCAGTGCTTCACAAGCAGAGAGCAAAGTCTTTTATTTGAAAATGAAAGGAGATTACTACCGTTACTTGGCTGAGGTTGT
TGCTGGTGATGACAAGAAAGGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAATCAGCAAAAAGGAAA
TGCAACCAACACATCCTATCAGACTGGGTCTGGCCCTTTACTCCTCTGTGTTCTATTACGAGATTCTGAACTCCCCAGGG
AAAGCCTGC

ORF - retro_nleu_487 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.1 %
Parental protein coverage: 77.14 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMDKNELVQKAKLAEQAERYDDMAACMKSV-TEQGAE-LSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK
MDKNELV.KAKLA..AERYDDMAACMKSV.TEQGAE.LSNEERNLLSVA.KNVVGA.RSS.RVVSSIEQK
RetrocopyMDKNELVEKAKLAQ*AERYDDMAACMKSV>TEQGAE>LSNEERNLLSVASKNVVGAYRSS*RVVSSIEQK
ParentalTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK
TEGAE.KQQ.AREYREKI.T.LRDICNDVLSLLEKFLIP.ASQAESKVFYLKMKGDYYRYLAEV.AGDDK
RetrocopyTEGAERKQQVAREYREKIQTQLRDICNDVLSLLEKFLIPSASQAESKVFYLKMKGDYYRYLAEVVAGDDK
ParentalKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKAC
KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLAL..SVFYYEILNSP.KAC
RetrocopyKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALYSSVFYYEILNSPGKAC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_487 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 74 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000086942 retrocopies
Bos taurus ENSBTAG000000002364 retrocopies
Canis familiaris ENSCAFG000000005806 retrocopies
Callithrix jacchus ENSCJAG000000158445 retrocopies
Dasypus novemcinctus ENSDNOG0000000167210 retrocopies
Ficedula albicollis ENSFALG000000058601 retrocopy
Felis catus ENSFCAG000000320174 retrocopies
Gallus gallus ENSGALG000000107251 retrocopy
Gorilla gorilla ENSGGOG000000221339 retrocopies
Mus musculus ENSMUSG000000222853 retrocopies
Nomascus leucogenys ENSNLEG000000006562 retrocopies
Nomascus leucogenys ENSNLEG00000003220 7 retrocopies
Nomascus leucogenys ENSNLEG000000066432 retrocopies
Nomascus leucogenys ENSNLEG000000135343 retrocopies
Oryctolagus cuniculus ENSOCUG000000007342 retrocopies
Pongo abelii ENSPPYG000000187917 retrocopies
Pelodiscus sinensis ENSPSIG000000037031 retrocopy
Sarcophilus harrisii ENSSHAG000000126712 retrocopies
Sus scrofa ENSSSCG000000060622 retrocopies
Taeniopygia guttata ENSTGUG000000120781 retrocopy



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