RetrogeneDB ID:

retro_nleu_54

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397425.1:2566372..2566816(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000018558
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2D4
Ensembl ID:ENSNLEG00000003364
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_54
ATGGCGCTGAAACGGATTAATAAGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGG
GGATGATATGTTTCATTGGCAAGCCACAATTATGGGATCTAATGACAGCCTATATCAAGGCTGTGTATTCTTTTTGACAA
TTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGTCACCTGCTTTAACAATTTCTAAAGTTCTTTTATCCATTTG
TTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGACCTATAAAACAGACAGAGATAAGT
ACAACAGAATATCTTGGGAATGTACTCAGAAGTATGCCATGTGA

ORF - retro_nleu_54 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.12 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT
MALKRI.KEL.DL.RDPPAQCSAGPVGDD.FHWQATIMG.NDS.YQG.VFFLTIHFPTDYPFKPPKVAFT
RetrocopyMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGSNDSLYQGCVFFLTIHFPTDYPFKPPKVAFT
ParentalTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE
T.IYHPNINSNGSICLDILRSQWSPALT.SKVLLSICSLLCDPNPDDPLVPEIA.TYK.DR.KYNR...E
RetrocopyTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARTYKTDRDKYNRISWE
ParentalWTQKYAM
.TQKYAM
RetrocopyCTQKYAM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_54 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 55 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000039971 retrocopy
Callithrix jacchus ENSCJAG000000078754 retrocopies
Dipodomys ordii ENSDORG000000068885 retrocopies
Homo sapiens ENSG000000789672 retrocopies
Gorilla gorilla ENSGGOG000000033783 retrocopies
Myotis lucifugus ENSMLUG000000119193 retrocopies
Macaca mulatta ENSMMUG000000024105 retrocopies
Nomascus leucogenys ENSNLEG000000001921 retrocopy
Nomascus leucogenys ENSNLEG00000003364 3 retrocopies
retro_nleu_54 , retro_nleu_876, retro_nleu_90,
Nomascus leucogenys ENSNLEG000000062901 retrocopy
Oryctolagus cuniculus ENSOCUG000000089001 retrocopy
Pongo abelii ENSPPYG000000297271 retrocopy
Sus scrofa ENSSSCG000000167222 retrocopies
Tupaia belangeri ENSTBEG000000036919 retrocopies
Tarsius syrichta ENSTSYG0000000059514 retrocopies



Copyright © RetrogeneDB 2014-2017