RetrogeneDB ID: | retro_tsyr_1859 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_625353:2..352(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D4 | ||
Ensembl ID: | ENSTSYG00000000595 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 4 (putative) [Source:HGNC Symbol;Acc:21647] |
Percent Identity: | 73.73 % |
Parental protein coverage: | 80.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAVKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLSIHFPTDYPFK-PPKVAF |
M..K.I.KEL.DL.R.PPAQCSAGPVG.D..H.QATI.GP.DSPYQGGVFFL.IH.PTDYPFK..PK.AF | |
Retrocopy | MVLKQINKELSDLARGPPAQCSAGPVGNDMLHCQATILGPDDSPYQGGVFFLTIHSPTDYPFK<TPKAAF |
Parental | TTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPED |
T..IYHPN..S.GSICL..LRSQWSPALT.S.VL.S..SLLCDPNP.D | |
Retrocopy | TAIIYHPNSDSKGSICLYSLRSQWSPALTISRVLSSVRSLLCDPNPDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003997 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007875 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Homo sapiens | ENSG00000078967 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003378 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011919 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003364 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029727 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003691 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000000595 | 14 retrocopies | |
Tarsius syrichta | ENSTSYG00000002281 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005459 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011229 | 3 retrocopies |