RetrogeneDB ID: | retro_mluc_1827 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429923:1917227..1917472(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D4 | ||
Ensembl ID: | ENSMLUG00000011919 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.56 % |
Parental protein coverage: | 55.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | IKKELSDLQRDPPAQWSA-RPVG-DDWFCWQATITG-PNDSPYQGGI-FFLNIHFPTDYPFKPPKVAFTT |
IKKELSDLQ.DPPAQW.A..P.G..DWFC.QAT.T..PNDSPYQGGI.FFLNIHFPTDY.FKPPKVAF.T | |
Retrocopy | IKKELSDLQSDPPAQWPA<KPAG<NDWFCRQATSTA<PNDSPYQGGI<FFLNIHFPTDYLFKPPKVAFAT |
Parental | KI--YHPNIHSNGSICL |
KI......IHSN...CL | |
Retrocopy | KIXXXXXSIHSNSGLCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003997 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007875 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Homo sapiens | ENSG00000078967 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003378 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005710 | 13 retrocopies | |
Myotis lucifugus | ENSMLUG00000011919 | 3 retrocopies |
retro_mluc_1826, retro_mluc_1827 , retro_mluc_594,
|
Myotis lucifugus | ENSMLUG00000025144 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003364 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029727 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003691 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000000595 | 14 retrocopies |