RetrogeneDB ID: | retro_tsyr_1162 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_329992:396..814(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D4 | ||
Ensembl ID: | ENSTSYG00000000595 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 4 (putative) [Source:HGNC Symbol;Acc:21647] |
Percent Identity: | 62.59 % |
Parental protein coverage: | 96.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | IQKELTDL-QRDPPAQCSAGPVGDDLFHW-QATIMGPNDSP-YQGGVFFLSIHFPTD-YPFKPPKVAFTT |
I.K.L.DL..R.....CSAGPVGDD.FH..Q....G.NDSP.Y.GGVFFL.IH.P.D...FK.PKV..TT | |
Retrocopy | IHKNLNDL<DRRTVE*CSAGPVGDDMFHD<QNRTIGVNDSP<Y*GGVFFLKIHLPKD<WHFKTPKVTCTT |
Parental | KIYHPNINSNGSICLDILRSQWSPALTVSK-VLLSICSLLCDPNPEDPLVPEIAHTY-ADREKYNRLARE |
.IYHPN.NSNGSICLDILR.QWSPA.T..K..LLSICSLLCD.N..D.LVP.I...Y..D.EKY.....E | |
Retrocopy | GIYHPNVNSNGSICLDILRAQWSPA-TFQK<ILLSICSLLCDLNSDDSLVPKIVGIYKTDKEKYSTITQE |
Parental | WTQKYAM |
WTQK..M | |
Retrocopy | WTQKCEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003997 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007875 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Homo sapiens | ENSG00000078967 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003378 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011919 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003364 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029727 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003691 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000000595 | 14 retrocopies | |
Tarsius syrichta | ENSTSYG00000002281 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005459 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011229 | 3 retrocopies |