RetrogeneDB ID: | retro_opri_321 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_5211:169620..170095(+) | ||
Located in intron of: | ENSOPRG00000008487 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSOPRG00000003999 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 73.29 % |
Parental protein coverage: | 96.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGPGFALVYSITAQST |
.VQFV.GIFVEK.D.TIEDSYRKQVE.D.Q.C.LEILDTA.TEQ.TA.RDLYMKNG.G.ALVYSITAQST | |
Retrocopy | SVQFVPGIFVEK*DATIEDSYRKQVELDAQWCVLEILDTAQTEQLTAKRDLYMKNGQGLALVYSITAQST |
Parental | FNDLQDLR-EQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI |
.NDL.DLR....L..K.DT..VPMIL.GNK.DLEDERV..KE..Q.LAR...NCAFL.SSAKSKINVNEI | |
Retrocopy | LNDLEDLR<NRFLELK<DTGEVPMILAGNKRDLEDERVASKEKSQHLARRQNNCAFLKSSAKSKINVNEI |
Parental | FYDLVRQINRKTPVEKKKPKK |
..DL.RQINRKTP...K..KK | |
Retrocopy | LHDLMRQINRKTPMAAKARKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |