RetrogeneDB ID: | retro_rnor_1639 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:134753275..134753828(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rap1a | ||
Ensembl ID: | ENSRNOG00000032463 | ||
Aliases: | Rap1a, RAP-1A, rap 1A | ||
Description: | Ras-related protein Rap-1A [Source:UniProtKB/Swiss-Prot;Acc:P62836] |
Percent Identity: | 84.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD |
M.EYKLVVLG.GG.GKS.LTVQ.VQ.I...EKYDP.IEDSY.KQV.VDCQQCMLEILDT.GTEQFTAMRD | |
Retrocopy | MHEYKLVVLG*GGMGKSDLTVQCVQVI>YFEKYDPSIEDSYIKQVKVDCQQCMLEILDTSGTEQFTAMRD |
Parental | LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWC |
L..KNGQGFALVYSITAQSTFNDLQDL.EQILRV.DTE.VPMILVGNK.DLEDERV..KEQ.Q.LARQWC | |
Retrocopy | LCLKNGQGFALVYSITAQSTFNDLQDLTEQILRVNDTEAVPMILVGNKSDLEDERVFSKEQDQDLARQWC |
Parental | NCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL |
NC.FLESSAKSKINV.EIFY.L.RQINRK.PVEKKKPK.KSCLLL | |
Retrocopy | NCPFLESSAKSKINVDEIFYELFRQINRKAPVEKKKPKGKSCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 49 .89 RPM |
SRP017611_liver | 0 .00 RPM | 26 .09 RPM |