RetrogeneDB ID: | retro_tsyr_1546 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_4852:794..1292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000006794 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSTSYG00000004521 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 80.12 % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF |
VQF.QGIFVEKYDPT.EDSYRKQ.EVD.Q.C.LEILDTAGT.QFT.MRDLYMKN.QGF.LVYSITAQSTF | |
Retrocopy | VQFIQGIFVEKYDPTVEDSYRKQGEVDAQPCRLEILDTAGT*QFTVMRDLYMKNRQGFTLVYSITAQSTF |
Parental | NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCSCAFLESSAK--SKINVNEIF |
NDLQDLREQILRVKDT.DVPM.LVGNKCDLEDERVVGKEQGQNLARQ...CAFLESSAK......VN.IF | |
Retrocopy | NDLQDLREQILRVKDTDDVPMLLVGNKCDLEDERVVGKEQGQNLARQRNNCAFLESSAKXXXXXXVNKIF |
Parental | YDLVRQINRKTPVEKKKPKKKSCLLL |
YD.V..I.RKTPV..K..KK.S..LL | |
Retrocopy | YDVVHLISRKTPVPRKARKKSSRQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |