RetrogeneDB ID: | retro_mdom_1327 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:14496359..14496686(-) | ||
Located in intron of: | ENSMODG00000021068 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000001323 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.5 % |
Parental protein coverage: | 92.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE |
.GFALVYSITAQSTFND.QDLREQILRVKDT.D.PMILVGNKCDLEDERV.GKEQGQNLARQWCNCAFLE | |
Retrocopy | KGFALVYSITAQSTFNDFQDLREQILRVKDTRDAPMILVGNKCDLEDERVIGKEQGQNLARQWCNCAFLE |
Parental | SSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL |
SSAKSKINVNEIFY.LVRQINRKTPVEKKKPKKKSCLLL | |
Retrocopy | SSAKSKINVNEIFYGLVRQINRKTPVEKKKPKKKSCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |