RetrogeneDB ID: | retro_vpac_491 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_2450:4287..4615(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSVPAG00000010033 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 76.79 % |
Parental protein coverage: | 59.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-RQWCNCAF |
GQGFALVYS.TAQ..FNDLQDLREQIL.VKDTEDVP.I.VGNK.DLE.E...GKEQ.QN.A.....NCA. | |
Retrocopy | GQGFALVYSVTAQFPFNDLQDLREQILWVKDTEDVPVIWVGNKRDLEGE*AAGKEQSQNVA<NSGVNCAS |
Parental | LESSAKSKINVNEIFYDLVRQINR-KTPVEKKKPKKKSCLLL |
LESSAKSK..VNE.FYDL.RQINR.KTPVEKKKPK.KSCL.L | |
Retrocopy | LESSAKSKVSVNEVFYDLFRQINR<KTPVEKKKPKRKSCLFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |