RetrogeneDB ID: | retro_cfam_696 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:13084494..13084907(+) | ||
Located in intron of: | ENSCAFG00000003181 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSCAFG00000013686 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 77.7 % |
Parental protein coverage: | 72.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EYKL-VVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE-QFTAM |
EYKL.VVL.SGGVGKSALTV.FVQG......EKYDPT...SY..Q.EV.CQQCML.ILDTAGT..Q.T.. | |
Retrocopy | EYKLLVVLSSGGVGKSALTVRFVQGXXXXXXEKYDPTM*ESYTRQAEVHCQQCMLGILDTAGTD<QLTVV |
Parental | RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR |
RDL.MKNGQGFALVYSITAQSTFNDL.D.RE.IL.V.DTEDVPM.LVGNKC.LEDERV.GKEQGQNLAR | |
Retrocopy | RDLSMKNGQGFALVYSITAQSTFNDL*DPREHILWVRDTEDVPMTLVGNKCELEDERVAGKEQGQNLAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 42 .67 RPM |
SRP017611_brain | 0 .00 RPM | 41 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 112 .53 RPM |
SRP017611_liver | 0 .00 RPM | 28 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005384 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013686 | 1 retrocopy |
retro_cfam_696 ,
|
Callithrix jacchus | ENSCJAG00000013392 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007809 | 5 retrocopies | |
Equus caballus | ENSECAG00000016434 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010446 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016893 | 2 retrocopies | |
Homo sapiens | ENSG00000116473 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010571 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000001323 | 3 retrocopies | |
Mus musculus | ENSMUSG00000068798 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004018 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003999 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000001028 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001102 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000032463 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027847 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004521 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010033 | 1 retrocopy |