RetrogeneDB ID: | retro_ecab_99 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:180246..180801(+) | ||
Located in intron of: | ENSECAG00000008775 | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006203 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016434 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL |
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL | |
Retrocopy | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL |
Parental | YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN |
YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN | |
Retrocopy | YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN |
Parental | CAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPRKKTCLLL |
CAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPRKKTCLLL | |
Retrocopy | CAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPRKKTCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .30 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .26 RPM | 0 .10 RPM |
SRP021940_embryo | 0 .59 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .91 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .58 RPM | 0 .08 RPM |
SRP021940_testis | 0 .26 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005384 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013686 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013392 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007809 | 5 retrocopies | |
Equus caballus | ENSECAG00000016434 | 1 retrocopy |
retro_ecab_99 ,
|
Erinaceus europaeus | ENSEEUG00000010446 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016893 | 2 retrocopies | |
Homo sapiens | ENSG00000116473 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010571 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000001323 | 3 retrocopies | |
Mus musculus | ENSMUSG00000068798 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004018 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003999 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000001028 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001102 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000032463 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027847 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004521 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010033 | 1 retrocopy |