RetrogeneDB ID: | retro_ptro_1149 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 16:67952091..67952936(-) | ||
Located in intron of: | ENSPTRG00000008269 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSPTRG00000000979 | ||
Aliases: | CNN3, calponin-3 | ||
Description: | None |
Percent Identity: | 59.09 % |
Parental protein coverage: | 86.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKV |
FNKGPSY.LSAEVKN...SKYD.Q.E..L..WI...T..SI...FQ.G.KD.IIL..L.N.LQPGSV... | |
Retrocopy | FNKGPSYWLSAEVKNRLLSKYDPQKEAELHSWIKGLTSLSISPDFQKGVKDRIILHTLMNELQPGSVP*I |
Parental | NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVK |
N.S..NW.QLEN..NFIKAI..YGM.P.D.FEA..LFE.GNM.QVQ..L.ALAG.AKT.G.....DI.V. | |
Retrocopy | NHSMQNWHQLENLSNFIKAIVSYGMNPMDLFEASNLFESGNMMQVQVSLLALAGKAKTNGLQSGVDISVR |
Parental | YAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQT-DKPFDQTTISLQMGTNK |
Y..KQ...FD....KAGQ.VIGLQMGTNKCASQ.GMT.YGTRRHLY.PK......P.D..TISLQMGTNK | |
Retrocopy | YSKKQEQNFD*NTTKAGQCVIGLQMGTNKCASQSGMTMYGTRRHLYSPKNHI<PAPVDHLTISLQMGTNK |
Parental | GASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIH |
.AS..GM.AP.T...IYD.KL.....DNS..SLQMG....A.Q....V.GLGRQ.Y...YC..P..PV.. | |
Retrocopy | CASHVGMTAPWTQLHIYDTKLGTNKCDNSSVSLQMGYLQGANQSS-QVFGLGRQIYNSNYC--PQGPVAN |
Parental | NGSQGT |
....GT | |
Retrocopy | RAPSGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .04 RPM | 37 .13 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .38 RPM |
SRP007412_heart | 0 .00 RPM | 25 .77 RPM |
SRP007412_kidney | 0 .10 RPM | 191 .01 RPM |
SRP007412_liver | 0 .00 RPM | 31 .03 RPM |
SRP007412_testis | 0 .00 RPM | 79 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1697 |
Pongo abelii | retro_pabe_1397 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Pan troglodytes | ENSPTRG00000001533 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |