Parental gene:

CNN3, ENSPTRG00000000979

Aliases:CNN3, calponin-3
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:95670972..95701714(-)


>ENSPTRG00000000979
ATGACCCACTTCAACAAGGGCCCTTCCTATGGGCTCTCGGCCGAAGTCAAGAACAAGATTGCTTCCAAGTATGATCATCA
GGCAGAAGAAGATCTTCGCAATTGGATAGAAGAGGTGACAGGCATGAGCATTGGCACCAACTTCCAGCTGGGCTTAAAGG
ATGGCATCATCCTCTGCGAACTTATAAACAAGCTACAGCCAGGCTCAGTGAAGAAGGTCAACGAGTCCTCACTGAACTGG
CCTCAGTTGGAGAATATTGGCAACTTTATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACATATTCGAAGCAAA
TGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACTACTCTGGTGGCTCTAGCAGGTCTGGCTAAAACAAAAGGAT
TCCATACAACCATTGACATTGGAGTTAAGTATGCAGAAAAACAAACAAGACGTTTTGATGAAGGAAAATTAAAAGCTGGC
CAAAGTGTAATTGGTCTGCAGATGGGAACCAACAAATGTGCCAGCCAGGCAGGTATGACAGCTTACGGGACTAGGAGGCA
TCTTTATGATCCCAAAATGCAAACTGACAAACCTTTTGACCAGACCACAATTAGTCTGCAGATGGGCACTAATAAAGGAG
CCAGCCAGGCAGGGATGTTAGCACCAGGTACCAGAAGAGACATCTATGATCAGAAGCTAACATTACAGCCGGTGGACAAC
TCAACAATTTCCCTACAGATGGGTACCAACAAAGTTGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTTGGGCGGCAAGT
ATATGATCCCAAATACTGTGCTGCTCCTACAGAACCTGTCATTCACAACGGAAGCCAAGGAACAGGAACAAATGGTTCGG
AAATCAGTGATAGTGATTATCAGGCAGAATACCCTGATGAGTATCATGGCGAGTACCAGGATGACTACCCCAGAGATTAC
CAATATAGCGACCAAGGCATTGATTATTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 37 .13 RPM
SRP007412_cerebellum 64 .38 RPM
SRP007412_heart 25 .77 RPM
SRP007412_kidney 191 .01 RPM
SRP007412_liver 31 .03 RPM
SRP007412_testis 79 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018128 ortholog_one2many 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Equus caballus ENSECAG00000020188 ortholog_one2one 1 retrogene
retro_ecab_655,
Echinops telfairi ENSETEG00000010095 ortholog_one2one 1 retrogene
retro_etel_638,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Monodelphis domestica ENSMODG00000004326 ortholog_one2one 1 retrogene
retro_mdom_442,
Nomascus leucogenys ENSNLEG00000011207 ortholog_one2one 5 retrogenes
retro_nleu_122, retro_nleu_1342, retro_nleu_2698, retro_nleu_480, retro_nleu_668,
Pan troglodytes ENSPTRG00000001533 within_species_paralog 1 retrogene
retro_ptro_2788,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2one 1 retrogene
retro_shar_567,
Tarsius syrichta ENSTSYG00000010749 ortholog_one2one 2 retrogenes
retro_tsyr_1458, retro_tsyr_1907,
Vicugna pacos ENSVPAG00000004889 ortholog_one2one 2 retrogenes
retro_vpac_190, retro_vpac_449,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_215 57.29 58.05
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2. retro_ptro_483 64.84 94.22
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3. retro_ptro_653 57.65 59.57
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4. retro_ptro_1061 57.25 81.46
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5. retro_ptro_1149 59.09 86.63
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6. retro_ptro_1247 57.04 84.50
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7. retro_ptro_1447 57.04 84.50
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8. retro_ptro_1505 58.98 77.20
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9. retro_ptro_1554 58.30 84.80
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10. retro_ptro_1871 61.03 81.76
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11. retro_ptro_2323 76.15 71.43
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12. retro_ptro_2377 64.86 67.48
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13. retro_ptro_2831 55.67 87.54
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14. retro_ptro_2894 57.05 91.79
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15. retro_ptro_3007 52.78 54.41
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Download FASTA sequences of all ENSPTRG00000000979 retrocopies