RetrogeneDB ID: | retro_ptro_2831 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:45023236..45024075(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSPTRG00000000979 | ||
Aliases: | CNN3, calponin-3 | ||
Description: | None |
Percent Identity: | 55.67 % |
Parental protein coverage: | 87.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VKNKIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKVN-ESSLNWPQLE |
V.N....K...Q.E..LR.WI...TG.SI...FQ.GLKDGIILC.L.NKLQPGSV.K.N..S..NW..LE | |
Retrocopy | VQNRLLPKFHSQKEAELRSWIKGFTGLSIRPDFQKGLKDGIILCTLVNKLQPGSVPKIN>ASV*NWH*LE |
Parental | NIGNFIKAIQAYGM-KPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFD |
N..NF.KA...YGM..P.D.FEANDLFE.GN..QV...L.ALAG.AKTKG.....DI..KY.EKQ...FD | |
Retrocopy | NLSNFLKAMVSYGM<DPVDLFEANDLFESGNNMQVRVSLLALAGKAKTKGLQSGVDIRDKYSEKQ--NFD |
Parental | EGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLY-DPKMQTDKPFDQTTISLQMGTNKGASQAGMLAP |
....KA.Q.VI.LQ..TNKCASQ.GMTAYGT.RHLY..PK.....P.D..TIS.QMGTNK.ASQ.GM.AP | |
Retrocopy | -WPMKASQCVIELQI-TNKCASQSGMTAYGTKRHLY<HPKNRILPPMDNSTISIQMGTNKCASQVGMTAP |
Parental | GTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNG |
GT.R.IYD.KL......NS..SL.MG...VA...G..V.GLGRQ.Y.PKY...P..PV.H.G....G... | |
Retrocopy | GTQRHIYDTKLGIDKCENSSMSLKMGYTQVANHSG-QVFGLGRQIYEPKY--*PGGPVAH-GAPSAGNSP |
Parental | SEISDSDYQAE |
.......YQ.E | |
Retrocopy | GPGEAPYYQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .13 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .38 RPM |
SRP007412_heart | 0 .00 RPM | 25 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 191 .01 RPM |
SRP007412_liver | 0 .00 RPM | 31 .03 RPM |
SRP007412_testis | 0 .00 RPM | 79 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Pan troglodytes | ENSPTRG00000001533 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |