Parental gene:

CNN3, ENSECAG00000020188

Aliases:None
Description:calponin 3, acidic [Source:HGNC Symbol;Acc:2157]
Organism:Horse (Equus caballus)
Coordinates:5:70248994..70274515(+)


>ENSECAG00000020188
ATGACCCACTTCAACAAGGGACCTTCCTACGGGCTCTCGGCCGAGGTCAAGAACAAGATTGCTTCCAAGTATGATCACCA
GGCAGAAGAAGATCTTCGCAATTGGATAGAAGAGGTGACAGGCATGAGCATTGGCACCAACTTTCAGCTGGGCTTAAAAG
ATGGCATAATCCTCTGCGAACTCATTAACAAGCTACAGCCAGGCTCAGTGAAGAAGGTCAACGAGTCCTCCTTAAACTGG
CCTCAGTTGGAGAATATTGGCAACTTTATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACATATTTGAAGCAAA
TGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACTACGCTGGTGGCTCTAGCAGGTCTGGCTAAAACAAAAGGAT
TCCATACAACCATTGACGTTGGAGTTAAGTATGCAGAAAAACAAACAAGACGTTTTGATGAAGGAAAATTAAAGGCTGGC
CAGAGTGTAATTGGTTTGCAGATGGGAACCAACAAATGCGCCAGCCAAGCAGGTATGACAGCCTATGGGACTAGGAGGCA
TCTTTATGATCCCAAAATGCAAACTGACAAACCTTTTGACCAGACCACGATTAGTCTGCAGATGGGCACCAACAAAGGAG
CCAGCCAGGCGGGGATGTTAGCACCGGGTACCAGGAGAGACATCTACGATCAGAAGCTAACATTACAGCCAGTGGACAAC
TCGACAATTTCTCTACAGATGGGTACCAACAAAGTCGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTGGGGCGGCAAGT
ATATGATCCCAAATACTGTGCTGCTCCAACAGAACCTGTCATTCACAATGGAAGCCAAGGAACAGGAACAAATGGGTCGG
AAATCAGTGATAGTGATTATCAGGCAGAATACCCAGATGAATATCATGGCGAGTACCAAGATGACTACCCCAGAGATTAC
CAATATGGCGACCAAGGCATTGATTATTAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 59 .74 RPM
SRP021940_embryo 93 .62 RPM
SRP021940_cerebellum 19 .99 RPM
SRP021940_testis 5 .50 RPM
SRP021940_placental_villous 45 .51 RPM
SRP021940_articular_cartilage 36 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018128 ortholog_one2many 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Echinops telfairi ENSETEG00000010095 ortholog_one2one 1 retrogene
retro_etel_638,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Monodelphis domestica ENSMODG00000004326 ortholog_one2one 1 retrogene
retro_mdom_442,
Nomascus leucogenys ENSNLEG00000011207 ortholog_one2one 5 retrogenes
retro_nleu_122, retro_nleu_1342, retro_nleu_2698, retro_nleu_480, retro_nleu_668,
Pan troglodytes ENSPTRG00000000979 ortholog_one2one 15 retrogenes
retro_ptro_1061, retro_ptro_1149, retro_ptro_1247, retro_ptro_1447, retro_ptro_1505, retro_ptro_1554, retro_ptro_1871, retro_ptro_215, retro_ptro_2323, retro_ptro_2377, retro_ptro_2831, retro_ptro_2894, retro_ptro_3007, retro_ptro_483, retro_ptro_653,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2one 1 retrogene
retro_shar_567,
Tarsius syrichta ENSTSYG00000010749 ortholog_one2one 2 retrogenes
retro_tsyr_1458, retro_tsyr_1907,
Vicugna pacos ENSVPAG00000004889 ortholog_one2one 2 retrogenes
retro_vpac_190, retro_vpac_449,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_655 95.48 67.17
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Download FASTA sequences of all ENSECAG00000020188 retrocopies