RetrogeneDB ID: | retro_ptro_483 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 10:43380720..43381629(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000029902 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSPTRG00000000979 | ||
Aliases: | CNN3, calponin-3 | ||
Description: | None |
Percent Identity: | 64.84 % |
Parental protein coverage: | 94.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVK |
T.FNKGPSYGLSAEVKN...SKYD.Q.E..LR.WIE..TG.SIG..FQ.GLKDG.ILC.L.NKLQPGSV. | |
Retrocopy | TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVP |
Parental | KVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIG |
K.N.S..NW.QLEN..NFIKA...YGM.P.D.FEANDLFE.GNMT.VQ..L.ALAG.AKTKG.....DIG | |
Retrocopy | KINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTRVQVSLLALAGKAKTKGLQSGVDIG |
Parental | VKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTN |
VKY.EKQ.R.FD....KAGQ.VIGLQMGTNKCASQ.GMTAYGTRRHLYDPK.....P.D..TISLQMGTN | |
Retrocopy | VKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQMGTN |
Parental | KGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVI |
K.ASQ.GM.APGTRR.IYD.KL.....DNS..SLQMG....A.Q.G..V.GLGRQ.YDPKYC..P...V. | |
Retrocopy | KCASQVGMTAPGTRRHIYDTKLGTDKCDNSSMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGTVA |
Parental | HNGSQGTGTNGSEISDSDYQAEYPDEYHGE |
.....GTG.......D.....EYP..Y..E | |
Retrocopy | DGAPSGTG----DCPDPGEVPEYPPYYQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 3 .13 RPM | 37 .13 RPM |
SRP007412_cerebellum | 3 .01 RPM | 64 .38 RPM |
SRP007412_heart | 7 .14 RPM | 25 .77 RPM |
SRP007412_kidney | 33 .55 RPM | 191 .01 RPM |
SRP007412_liver | 24 .32 RPM | 31 .03 RPM |
SRP007412_testis | 1 .58 RPM | 79 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Pan troglodytes | ENSPTRG00000001533 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |