RetrogeneDB ID: | retro_sscr_108 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:63646192..63646747(+) | ||
Located in intron of: | ENSSSCG00000025426 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 82.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MVRYSLDP-ENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYN-GVGR |
MV.YSLDP..NP.KS..SRGSNL.VHFKNT..TAQAIKGMHIRKATK.LKD.TLQKQCVPFR.YN.G.GR | |
Retrocopy | MVCYSLDP>KNPIKS*ESRGSNLHVHFKNTHDTAQAIKGMHIRKATKDLKDVTLQKQCVPFRHYNGGAGR |
Parental | CAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTY-RA-HGRI |
CA..K..WG.TQG..PKKS.EFLLHMLKNAESNAELKGLDV.S.VI.HIQVNKAPKM.RRTY.RA..G.I | |
Retrocopy | CAHTK*AWG*TQGQ*PKKS-EFLLHMLKNAESNAELKGLDVESPVIQHIQVNKAPKMQRRTYNRA<SGQI |
Parental | NPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
NPY.SSPCHI.MILTEKEQIVPKPEEEVA.KKKISQKKLKKQKLMARE | |
Retrocopy | NPYLSSPCHIKMILTEKEQIVPKPEEEVA*KKKISQKKLKKQKLMARE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 409 .48 RPM |
SRP014902_testis | 0 .85 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .03 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 518 .83 RPM |
SRP018288_liver | 0 .32 RPM | 468 .70 RPM |
SRP018288_lung | 0 .31 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .09 RPM | 2235 .01 RPM |
SRP035408_brain | 1 .68 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .56 RPM | 949 .78 RPM |