Parental gene:

RPL17, ENSSSCG00000029642

Aliases:None
Description:ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]
Organism:Pig (Sus scrofa)
Coordinates:1:108447523..108451374(-)


>ENSSSCG00000029642
ATGGTTCGCTATTCACTCGACCCAGAAAACCCCACAAAATCATGCAAATCAAGAGGTTCAAATCTTCGTGTTCACTTTAA
GAACACTCGTGAAACTGCCCAGGCCATTAAGGGTATGCATATTCGAAAAGCCACCAAGTATCTGAAAGACTTCACTCTAC
AGAAGCAATGTGTGCCATTCCGTCGTTACAATGGTGTCGGTAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAGGGT
CGGTGGCCCAAAAAGAGTGCTGAATTTTTATTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGCTTAGA
TGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAACAAAGCCCCCAAAATGCGGCGTAGGACTTACAGAGCTCATGGTC
GAATCAACCCTTACATGAGTTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAAGAGCAGATTGTTCCTAAGCCAGAA
GAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAGCAAAAACTTATGGCCCGGGAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 409 .48 RPM
SRP014902_testis 1086 .45 RPM
SRP018856_adipose 2235 .01 RPM
SRP018288_kidney 518 .83 RPM
SRP018288_lung 447 .73 RPM
SRP018288_liver 468 .70 RPM
SRP018288_heart 699 .89 RPM
SRP035408_liver 949 .78 RPM
SRP035408_brain 1765 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 ortholog_one2one 40 retrogenes
retro_amel_1147, retro_amel_1150, retro_amel_1252, retro_amel_1273, retro_amel_132, retro_amel_1422, retro_amel_1435, retro_amel_1487, retro_amel_1541, retro_amel_156, retro_amel_1567, retro_amel_1582, retro_amel_1599, retro_amel_1622, retro_amel_1624, retro_amel_1652, retro_amel_1703, retro_amel_1704, retro_amel_1743, retro_amel_1757, retro_amel_184, retro_amel_1908, retro_amel_1922, retro_amel_208, retro_amel_359, retro_amel_401, retro_amel_425, retro_amel_426, retro_amel_452, retro_amel_486, retro_amel_589, retro_amel_731, retro_amel_736, retro_amel_780, retro_amel_820, retro_amel_834, retro_amel_865, retro_amel_950, retro_amel_953, retro_amel_980,
Canis familiaris ENSCAFG00000019044 ortholog_one2many 7 retrogenes
retro_cfam_102, retro_cfam_171, retro_cfam_175, retro_cfam_189, retro_cfam_2, retro_cfam_239, retro_cfam_34,
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
retro_cjac_122, retro_cjac_248, retro_cjac_360, retro_cjac_376,
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
retro_etel_1787, retro_etel_1810, retro_etel_1900, retro_etel_1936, retro_etel_1954, retro_etel_207, retro_etel_396, retro_etel_470, retro_etel_565, retro_etel_831,
Felis catus ENSFCAG00000011342 ortholog_one2one 43 retrogenes
retro_fcat_1002, retro_fcat_1004, retro_fcat_1019, retro_fcat_1050, retro_fcat_1065, retro_fcat_1196, retro_fcat_1235, retro_fcat_1300, retro_fcat_1322, retro_fcat_1426, retro_fcat_1427, retro_fcat_1432, retro_fcat_1516, retro_fcat_1525, retro_fcat_1539, retro_fcat_1552, retro_fcat_1588, retro_fcat_1655, retro_fcat_1692, retro_fcat_1699, retro_fcat_1703, retro_fcat_1740, retro_fcat_1746, retro_fcat_1821, retro_fcat_1864, retro_fcat_1892, retro_fcat_1917, retro_fcat_2023, retro_fcat_211, retro_fcat_264, retro_fcat_360, retro_fcat_461, retro_fcat_481, retro_fcat_488, retro_fcat_532, retro_fcat_607, retro_fcat_734, retro_fcat_791, retro_fcat_808, retro_fcat_855, retro_fcat_900, retro_fcat_917, retro_fcat_988,
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
retro_hsap_2367,
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
retro_ggor_167,
Latimeria chalumnae ENSLACG00000008835 ortholog_one2one 1 retrogene
retro_lcha_38,
Loxodonta africana ENSLAFG00000005569 ortholog_one2one 16 retrogenes
retro_lafr_1001, retro_lafr_1036, retro_lafr_1060, retro_lafr_1130, retro_lafr_177, retro_lafr_186, retro_lafr_207, retro_lafr_213, retro_lafr_256, retro_lafr_293, retro_lafr_354, retro_lafr_721, retro_lafr_731, retro_lafr_773, retro_lafr_860, retro_lafr_933,
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
retro_meug_1111, retro_meug_127, retro_meug_1285, retro_meug_1485, retro_meug_1821, retro_meug_188, retro_meug_1886, retro_meug_191, retro_meug_204, retro_meug_2159, retro_meug_2167, retro_meug_2183, retro_meug_257, retro_meug_326, retro_meug_355, retro_meug_373, retro_meug_410, retro_meug_413, retro_meug_509, retro_meug_58, retro_meug_703, retro_meug_738, retro_meug_740, retro_meug_779, retro_meug_81, retro_meug_934,
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
retro_mmul_1015, retro_mmul_1046, retro_mmul_1205, retro_mmul_1216, retro_mmul_1225, retro_mmul_1441, retro_mmul_163, retro_mmul_172, retro_mmul_1784, retro_mmul_1858, retro_mmul_1952, retro_mmul_2006, retro_mmul_2008, retro_mmul_2257, retro_mmul_2268, retro_mmul_2284, retro_mmul_2304, retro_mmul_2512, retro_mmul_46, retro_mmul_474, retro_mmul_589, retro_mmul_652, retro_mmul_669, retro_mmul_825, retro_mmul_956, retro_mmul_971,
Mustela putorius furo ENSMPUG00000000801 ortholog_one2many 7 retrogenes
retro_mputfur_1008, retro_mputfur_126, retro_mputfur_1349, retro_mputfur_16, retro_mputfur_184, retro_mputfur_40, retro_mputfur_536,
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
retro_pabe_1177, retro_pabe_1178, retro_pabe_1179, retro_pabe_1197, retro_pabe_1373, retro_pabe_1408, retro_pabe_1448, retro_pabe_1464, retro_pabe_1531, retro_pabe_1565, retro_pabe_1574, retro_pabe_1725, retro_pabe_1807, retro_pabe_1832, retro_pabe_1902, retro_pabe_2052, retro_pabe_2053, retro_pabe_2088, retro_pabe_2102, retro_pabe_2164, retro_pabe_2231, retro_pabe_2317, retro_pabe_2520, retro_pabe_2635, retro_pabe_2638, retro_pabe_2871, retro_pabe_2917, retro_pabe_2921, retro_pabe_2971, retro_pabe_3020, retro_pabe_3029, retro_pabe_3103, retro_pabe_3187, retro_pabe_3248, retro_pabe_3253, retro_pabe_3262, retro_pabe_3277, retro_pabe_347, retro_pabe_3493, retro_pabe_539, retro_pabe_567, retro_pabe_617, retro_pabe_882,
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene
retro_vpac_10,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_108 82.45 100.00
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2. retro_sscr_110 76.67 64.48
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3. retro_sscr_111 76.58 83.61
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4. retro_sscr_121 75.16 84.70
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5. retro_sscr_180 76.92 69.95
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6. retro_sscr_340 74.53 86.34
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7. retro_sscr_370 59.73 80.33
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8. retro_sscr_386 69.44 57.38
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9. retro_sscr_403 56.39 69.95
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10. retro_sscr_413 59.69 68.31
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11. retro_sscr_442 86.41 100.00
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12. retro_sscr_460 76.63 99.45
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13. retro_sscr_481 64.54 74.32
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14. retro_sscr_496 79.29 75.41
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15. retro_sscr_502 75.86 62.30
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16. retro_sscr_592 70.17 96.17
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17. retro_sscr_613 69.70 69.95
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18. retro_sscr_768 64.54 75.96
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19. retro_sscr_823 87.50 100.00
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20. retro_sscr_848 82.57 59.02
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21. retro_sscr_857 81.95 72.13
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22. retro_sscr_881 82.57 59.02
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23. retro_sscr_931 72.11 100.00
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24. retro_sscr_1002 67.65 54.64
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25. retro_sscr_1003 67.65 54.64
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26. retro_sscr_1033 75.45 89.62
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27. retro_sscr_1067 78.61 100.00
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28. retro_sscr_1106 72.09 67.76
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29. retro_sscr_1151 76.22 100.00
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30. retro_sscr_1170 73.62 87.98
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Download FASTA sequences of all ENSSSCG00000029642 retrocopies