RetrogeneDB ID: | retro_sscr_121 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:113933452..113933918(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000004527 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 75.16 % |
Parental protein coverage: | 84.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYNG-VGRCAQA |
YSLD.ENPT.SC.SR.SNLRVH.KNTRETAQAIKGMHI.KA.KYLKD.TLQKQCVPF..Y.G.VGRCAQ. | |
Retrocopy | YSLDLENPTQSCQSRSSNLRVHVKNTRETAQAIKGMHIQKASKYLKDVTLQKQCVPFSHYSGGVGRCAQV |
Parental | KQWGWTQGRW-PKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSS |
K.WGW.QG.W.PKK...F.....K...SN.E.KGLD.DSLVIEHIQVNKAPKM..RTY.AH..INPYM.S | |
Retrocopy | KPWGWIQGHW>PKKVLNFYCTCSK-M*SNSEFKGLDIDSLVIEHIQVNKAPKMQLRTYSAHDQINPYMCS |
Parental | PCHIEMILTEKEQIVPK |
PCHIEMILTEKEQ.V.K | |
Retrocopy | PCHIEMILTEKEQFVSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 409 .48 RPM |
SRP014902_testis | 0 .00 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .08 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 518 .83 RPM |
SRP018288_liver | 0 .00 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .17 RPM | 2235 .01 RPM |
SRP035408_brain | 0 .03 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .00 RPM | 949 .78 RPM |