RetrogeneDB ID: | retro_sscr_442 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:92379881..92380433(-) | ||
Located in intron of: | ENSSSCG00000010351 | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000027329 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 86.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYNG-VGRC |
M..YSLDPENPTKSCK.R.SNLRVHFKNTRETAQAIKGMHI.KATKY.KD.TLQKQCVPFR.YN..V.R. | |
Retrocopy | MAHYSLDPENPTKSCK*RCSNLRVHFKNTRETAQAIKGMHI*KATKYPKDVTLQKQCVPFRCYNDRVHRY |
Parental | AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYM |
AQAKQWGWTQG.WP.KS.EFL.HMLK.AESNA.LKGLDVDSLVIEHIQVN.APKM..RTYRAHG.INPYM | |
Retrocopy | AQAKQWGWTQGQWPQKSDEFLSHMLKIAESNAKLKGLDVDSLVIEHIQVNQAPKMWCRTYRAHGQINPYM |
Parental | SSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
SSPCHIEMILTEKEQ.VPKPEEEVA.KKKISQKKLKKQKLMA.E | |
Retrocopy | SSPCHIEMILTEKEQTVPKPEEEVAPKKKISQKKLKKQKLMAKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 409 .48 RPM |
SRP014902_testis | 0 .14 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .05 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .30 RPM | 518 .83 RPM |
SRP018288_liver | 0 .64 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .05 RPM | 2235 .01 RPM |
SRP035408_brain | 2 .67 RPM | 1765 .53 RPM |
SRP035408_liver | 2 .20 RPM | 949 .78 RPM |