RetrogeneDB ID: | retro_sscr_848 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:101957330..101957650(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 82.57 % |
Parental protein coverage: | 59.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN-KAPKMRRRTYRAHGRINPYMSSPCH |
G.TQG.WPKKS.EFL.HMLKNAE...ELKGLDV..LVIEHIQVN...PKM..RTYRAHG.INPYMSSPCH | |
Retrocopy | GQTQGQWPKKS-EFLMHMLKNAECDTELKGLDVEPLVIEHIQVN<QSPKMQHRTYRAHGQINPYMSSPCH |
Parental | IEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
.EMILTEKEQIVPKPEEE.AQKKKI.QKKLKKQKLMA.E | |
Retrocopy | TEMILTEKEQIVPKPEEEAAQKKKIYQKKLKKQKLMAQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 409 .48 RPM |
SRP014902_testis | 0 .00 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .00 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 518 .83 RPM |
SRP018288_liver | 0 .00 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .00 RPM | 2235 .01 RPM |
SRP035408_brain | 0 .00 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .00 RPM | 949 .78 RPM |