Parental gene:

BT.53243, ENSBTAG00000001489

Aliases:None
Description:tubulin alpha-1B chain [Source:RefSeq peptide;Acc:NP_001159977]
Organism:Cow (Bos taurus)
Coordinates:5:30821250..30825700(+)


>ENSBTAG00000001489
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACTATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGGGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAGGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGGGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGCCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTCGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCGACATATACTAACCTGAATAGGCTGATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGGTTTGATGGCGCCCTGAATGTGGATCTGACAGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGGAAATACATGGCCTGCTGCCTGTTGTACCGT
GGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTAAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAATTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAAGGAGAAGGAGAGGAAGAAGGAGAGGAATACTAA

Library Parental gene expression (RPM)
ERP005899_liver 3 .53 RPM
ERP005899_muscle 20 .96 RPM
SRP017611_brain 359 .36 RPM
SRP017611_kidney 19 .68 RPM
SRP017611_liver 4 .68 RPM
SRP030211_testis 77 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012244 within_species_paralog 1 retrogene
retro_btau_402,
Bos taurus ENSBTAG00000039992 within_species_paralog 1 retrogene
retro_btau_840,
Callithrix jacchus ENSCJAG00000020894 ortholog_one2one 2 retrogenes
retro_cjac_1209, retro_cjac_3157,
Dasypus novemcinctus ENSDNOG00000004121 ortholog_one2one 1 retrogene
retro_dnov_43,
Equus caballus ENSECAG00000013798 ortholog_one2one 1 retrogene
retro_ecab_223,
Homo sapiens ENSG00000167552 ortholog_one2one 1 retrogene
retro_hsap_3313,
Nomascus leucogenys ENSNLEG00000017836 ortholog_one2many 2 retrogenes
retro_nleu_245, retro_nleu_2757,
Oryctolagus cuniculus ENSOCUG00000027812 ortholog_one2one 1 retrogene
retro_ocun_197,
Pteropus vampyrus ENSPVAG00000004645 ortholog_one2one 2 retrogenes
retro_pvam_1283, retro_pvam_414,
Rattus norvegicus ENSRNOG00000004559 ortholog_one2one 3 retrogenes
retro_rnor_1200, retro_rnor_2006, retro_rnor_446,
Vicugna pacos ENSVPAG00000005749 ortholog_one2one 4 retrogenes
retro_vpac_157, retro_vpac_210, retro_vpac_429, retro_vpac_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_251 97.28 97.78
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2. retro_btau_350 81.15 100.00
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3. retro_btau_929 94.52 97.12
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Download FASTA sequences of all ENSBTAG00000001489 retrocopies