Parental gene: | TUBA1A, ENSVPAG00000005749 |
| Aliases: | None |
| Description: | tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766] |
| Organism: | Alpaca (Vicugna pacos) |
| Coordinates: | scaffold_3229:152947..156815(+) |
>ENSVPAG00000005749
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTCGTAGACCTGGAACCTACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGCGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTCGGCGGGGGAACTGGTTCTGGGTTTACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCTAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCTCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTCGACAACGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACAAACCTGAATAGGTTGATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTCAATCTGGCAGAATTCCAAACCAACCTGGTGCCCCATCCTCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAACCTATCAGGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACGAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATAGCTTGCTGCCTGTTGTACCAT
GGTGATGTGGTCCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACGGTGGTACCTGGTGGAGACCTGGCCAAAGTACAGCGAG
CTCTGTGCATGCTGAGCAACACCACCGCCAGTGCTGAGGCCTGGGCTTGCCTGGACCACAAGTCTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTAGATTCTGTTCAAGGAGAGGGAGAGGAAGAAGGAGAGGAATACTCA
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTCGTAGACCTGGAACCTACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGCGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTCGGCGGGGGAACTGGTTCTGGGTTTACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCTAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCTCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTCGACAACGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACAAACCTGAATAGGTTGATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTCAATCTGGCAGAATTCCAAACCAACCTGGTGCCCCATCCTCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAACCTATCAGGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACGAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATAGCTTGCTGCCTGTTGTACCAT
GGTGATGTGGTCCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACGGTGGTACCTGGTGGAGACCTGGCCAAAGTACAGCGAG
CTCTGTGCATGCTGAGCAACACCACCGCCAGTGCTGAGGCCTGGGCTTGCCTGGACCACAAGTCTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTAGATTCTGTTCAAGGAGAGGGAGAGGAAGAAGGAGAGGAATACTCA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001489 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020894 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000004121 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000013798 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000167552 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017836 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000027812 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000004645 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000004559 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_vpac_72 | 89.18 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_vpac_157 | 88.68 | 83.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_vpac_210 | 87.53 | 85.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_vpac_429 | 91.53 | 67.04 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSVPAG00000005749 retrocopies