RetrogeneDB ID: | retro_btau_251 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:40580692..40582015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000034182 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.53243 | ||
Ensembl ID: | ENSBTAG00000001489 | ||
Aliases: | None | ||
Description: | tubulin alpha-1B chain [Source:RefSeq peptide;Acc:NP_001159977] |
Percent Identity: | 97.28 % |
Parental protein coverage: | 97.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL |
..ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG.GKHVPRAVFVDL | |
Retrocopy | IHECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGTGKHVPRAVFVDL |
Parental | EPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS |
EPTVIDEV.TGTYRQLFHP.QLITGKEDAANNYARGHYTIGKEII.LVLDRI.KLADQCTGLQGFLVFHS | |
Retrocopy | EPTVIDEVCTGTYRQLFHPKQLITGKEDAANNYARGHYTIGKEIIGLVLDRIWKLADQCTGLQGFLVFHS |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA.VEPYNSILTTHTTLEHSDCAFMVDNEAIY | |
Retrocopy | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAIVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
Parental | DICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK |
DIC.RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK | |
Retrocopy | DICIRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK |
Parental | AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG |
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG | |
Retrocopy | AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG |
Parental | FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE |
F.VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE | |
Retrocopy | FEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE |
Parental | AREDMAALEKDYEEVGVDSVE |
ARED.AALEKDYEEV.VDSVE | |
Retrocopy | AREDIAALEKDYEEVAVDSVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 3 .53 RPM |
ERP005899_muscle | 0 .05 RPM | 20 .96 RPM |
SRP017611_brain | 0 .91 RPM | 359 .36 RPM |
SRP017611_kidney | 0 .30 RPM | 19 .68 RPM |
SRP017611_liver | 0 .60 RPM | 4 .68 RPM |
SRP030211_testis | 0 .06 RPM | 77 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies |
retro_btau_251 , retro_btau_350, retro_btau_929,
|
Bos taurus | ENSBTAG00000012244 | 1 retrocopy | |
Bos taurus | ENSBTAG00000039992 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020894 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004121 | 1 retrocopy | |
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Homo sapiens | ENSG00000167552 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017836 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027812 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004645 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004559 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005749 | 4 retrocopies |