RetrogeneDB ID: | retro_btau_350 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:69776342..69777686(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.53243 | ||
Ensembl ID: | ENSBTAG00000001489 | ||
Aliases: | None | ||
Description: | tubulin alpha-1B chain [Source:RefSeq peptide;Acc:NP_001159977] |
Percent Identity: | 81.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL |
M.ECISIH.GQ.GVQ.GNACWELYCLEHG.QPDGQMPSDKT.GGGDDSF.TFFSET..GKHVPRAVFVDL | |
Retrocopy | MCECISIHFGQVGVQTGNACWELYCLEHGLQPDGQMPSDKTTGGGDDSFDTFFSETDTGKHVPRAVFVDL |
Parental | EPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS |
E...IDEV.TGTY.QLFHPEQLITGKEDAA.N.ARGH.T.G.EI.DL.LD.I.KLA.QCTGLQGFLVFHS | |
Retrocopy | ESPLIDEVCTGTYCQLFHPEQLITGKEDAASNCARGHHTTGEEITDLILDQIQKLAEQCTGLQGFLVFHS |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
F.GG.............SVDYGKKSKL.FSIYPAPQ..TAV.EPYNSILTTHTTL.HSDCAF.VDNEAI. | |
Retrocopy | F-GGGTGSGSPHC*WNVSVDYGKKSKLGFSIYPAPQL*TAVAEPYNSILTTHTTLKHSDCAFVVDNEAIN |
Parental | DICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK |
DIC.R.LDIE.P.Y.NLNRLIGQIVSS.TASLR..GALNVD.TEFQTNLVPYPRIHFPLATYAPVISAEK | |
Retrocopy | DICPRKLDIECPAYINLNRLIGQIVSSVTASLRCEGALNVDPTEFQTNLVPYPRIHFPLATYAPVISAEK |
Parental | AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG |
A..E.LSVAEITNACFEPAN..VKCDP..GKYMACCLLYRGD.VPKDV.AA.ATIKTKRTIQFVDWCP.G | |
Retrocopy | AHRE*LSVAEITNACFEPANRKVKCDPCRGKYMACCLLYRGDMVPKDVSAASATIKTKRTIQFVDWCPSG |
Parental | FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE |
FKVGINYQPP.VVPGGDLAKV..AVC.LSNTT...EAW..LDH...LMY.K.AFVHWY.GEGMEEGE.SE | |
Retrocopy | FKVGINYQPPAVVPGGDLAKVKQAVCTLSNTTTTTEAWTHLDH--NLMYTKHAFVHWYMGEGMEEGELSE |
Parental | AREDMAALEKDYEEVGVDSVEGEGEEEGEEY |
A.E.MA.LEKDYE.VGVDSVEGEGEEEGEEY | |
Retrocopy | AHEAMASLEKDYEDVGVDSVEGEGEEEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 3 .53 RPM |
ERP005899_muscle | 0 .00 RPM | 20 .96 RPM |
SRP017611_brain | 0 .00 RPM | 359 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .68 RPM |
SRP017611_liver | 0 .00 RPM | 4 .68 RPM |
SRP030211_testis | 0 .01 RPM | 77 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies |
retro_btau_251, retro_btau_350 , retro_btau_929,
|
Bos taurus | ENSBTAG00000012244 | 1 retrocopy | |
Bos taurus | ENSBTAG00000039992 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020894 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004121 | 1 retrocopy | |
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Homo sapiens | ENSG00000167552 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017836 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027812 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004645 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004559 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005749 | 4 retrocopies |