RetrogeneDB ID: | retro_vpac_157 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2225:238051..239183(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1A | ||
Ensembl ID: | ENSVPAG00000005749 | ||
Aliases: | None | ||
Description: | tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766] |
Percent Identity: | 88.68 % |
Parental protein coverage: | 83.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL |
..ECISI.VGQAG.QIGNACW.LYCLEHGIQPDG.MPSDKT.GG.D.SFNTF.SETGAG.H.PRAVFVDL | |
Retrocopy | LHECISIRVGQAGAQIGNACWKLYCLEHGIQPDGLMPSDKTSGGEDNSFNTF-SETGAGNHLPRAVFVDL |
Parental | EPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS |
EPTVIDEVRTGTYRQLFHPEQLITGKEDAA.NYARGHYTIGKEIIDLV.D.IRKLADQCTGLQGFLVFHS | |
Retrocopy | EPTVIDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIIDLVVDQIRKLADQCTGLQGFLVFHS |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVELYNSILTTHTTLEHSDCAFMVDNEAIY |
FGGGTGSG.TSLLMERLSVDYGKKSKLEFSIYP..QVSTAVVE.Y.SILTTHTTLEHSDCAFMVDNE.IY | |
Retrocopy | FGGGTGSGLTSLLMERLSVDYGKKSKLEFSIYPDHQVSTAVVEPYSSILTTHTTLEHSDCAFMVDNEVIY |
Parental | DICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVNLAEFQTNLVPHPRIHFPLATYAPVISAEK |
.ICRRNLDIERPTYTNLNRLIGQIVSS.TASLRFDGALNV.L.EFQTNLVP.P.IHFPLATYAPVISAEK | |
Retrocopy | GICRRNLDIERPTYTNLNRLIGQIVSSTTASLRFDGALNVDLIEFQTNLVPYPLIHFPLATYAPVISAEK |
Parental | TYQEQLSVAEITNACFEPANEMVKCDPRHGKYIACCLLYHGDVVPKDVNAAIATIKTKR-TIQFVDWCPT |
.Y.EQLSVAEIT..CFEPAN..VK.DP.HGK..ACCLLY.GDVVPKDV.AAIATIKTKR..IQFVDWCPT | |
Retrocopy | AYHEQLSVAEIT-TCFEPANQRVKSDPHHGKHMACCLLYRGDVVPKDVSAAIATIKTKR>IIQFVDWCPT |
Parental | GFKVGINYQPPTVVPGGDLAKVQRALCMLS |
GFKVGINYQPPTVVPGGDLAKVQ.A.CMLS | |
Retrocopy | GFKVGINYQPPTVVPGGDLAKVQ*AVCMLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020894 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004121 | 1 retrocopy | |
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Homo sapiens | ENSG00000167552 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017836 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027812 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004645 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004559 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005749 | 4 retrocopies |