RetrogeneDB ID: | retro_dnov_43 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_74747:5903..7250(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000016491 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1A | ||
Ensembl ID: | ENSDNOG00000004121 | ||
Aliases: | None | ||
Description: | tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766] |
Percent Identity: | 94. % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE | |
Retrocopy | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF | |
Retrocopy | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
Parental | GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD | |
Retrocopy | GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
Parental | ICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDQTEFPTKLVPYPHIHFPLATYAPIISVEKA |
ICRRNLDIERPTYTNLN.LI.QIVSSITASLRFDGALNVD.TEF.T.LVPYP.IHFPLAT.AP.IS.EKA | |
Retrocopy | ICRRNLDIERPTYTNLNHLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATSAPVISAEKA |
Parental | YHEQLSVAEITSVCFELANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF |
YHEQLSVAEIT..CFE.ANQMVKCDP.HGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF | |
Retrocopy | YHEQLSVAEITNACFEPANQMVKCDPNHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF |
Parental | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKHAFVHCYMREGMEEGEFSEA |
KV.INYQPPTVVPGGDLAKVQRAVCMLSNTTA.AEAWARLDHKFDLMYAK.AFVH.Y..EGMEEGEFSEA | |
Retrocopy | KVSINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA |
Parental | HENMAALKKDYEEVGVDSVEGEGEEEGEDY |
.E.MAAL.KDYEEVG.DS..GEGE.EGE.Y | |
Retrocopy | REDMAALEKDYEEVGADS--GEGENEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 11 .67 RPM | 26 .64 RPM |
SRP012922_cerebellum | 19 .52 RPM | 155 .89 RPM |
SRP012922_heart | 4 .41 RPM | 18 .56 RPM |
SRP012922_kidney | 9 .86 RPM | 14 .51 RPM |
SRP012922_liver | 2 .94 RPM | 6 .50 RPM |
SRP012922_lung | 7 .18 RPM | 53 .00 RPM |
SRP012922_quadricep_muscle | 3 .63 RPM | 11 .94 RPM |
SRP012922_spleen | 12 .71 RPM | 47 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020894 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004121 | 1 retrocopy |
retro_dnov_43 ,
|
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Homo sapiens | ENSG00000167552 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017836 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027812 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004645 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004559 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005749 | 4 retrocopies |