Parental gene: | TUBA1A, ENSPVAG00000004645 |
| Aliases: | None |
| Description: | tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766] |
| Organism: | Megabat (Pteropus vampyrus) |
| Coordinates: | GeneScaffold_1815:205406..209389(-) |
>ENSPVAG00000004645
ATGCGTGAGTGCATCTCTATCCATGTTGGCCAGGCTGGTGTTCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAAACCATTGGGGGGGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCCGAGCAGCTCATCACAGGCAAGGAAGATGCCGCCAATAACTATGCTCGTGGGCA
CTACACCATTGGCAAAGAGATCATTGACCTTGTCTTGGATCGAATTCGGAAGCTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCATAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCCGATTGTGCCTTCATGGTTGACAACGAGGCCATCTATGACATCTGTC
GTAGAAACCTTGATATTGAGCGCCCAACCTACACTAACCTGAATAGATTGATAGGTCAAATTGTATCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTTGATCTAACAGAATTCCAGACCAACCTGGTACCCTATCCCCGCATCCACTT
CCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CGTGCTTTGAGCCAGCCAACCAGATGGTAAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGGGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTAGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACTACAGCTATAGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAACGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCTCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAGGAAGAAGGAGAGGAATACTAA
ATGCGTGAGTGCATCTCTATCCATGTTGGCCAGGCTGGTGTTCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAAACCATTGGGGGGGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCCGAGCAGCTCATCACAGGCAAGGAAGATGCCGCCAATAACTATGCTCGTGGGCA
CTACACCATTGGCAAAGAGATCATTGACCTTGTCTTGGATCGAATTCGGAAGCTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCATAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCCGATTGTGCCTTCATGGTTGACAACGAGGCCATCTATGACATCTGTC
GTAGAAACCTTGATATTGAGCGCCCAACCTACACTAACCTGAATAGATTGATAGGTCAAATTGTATCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTTGATCTAACAGAATTCCAGACCAACCTGGTACCCTATCCCCGCATCCACTT
CCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CGTGCTTTGAGCCAGCCAACCAGATGGTAAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGGGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTAGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACTACAGCTATAGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAACGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCTCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAGGAAGAAGGAGAGGAATACTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001489 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020894 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000004121 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000013798 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000167552 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017836 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000027812 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000004646 | within_species_paralog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000010798 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004559 | ortholog_one2one | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000005749 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pvam_414 | 81.16 | 64.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pvam_1283 | 85.49 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPVAG00000004645 retrocopies