RetrogeneDB ID: | retro_vpac_210 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_286:222822..223971(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1A | ||
Ensembl ID: | ENSVPAG00000005749 | ||
Aliases: | None | ||
Description: | tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766] |
Percent Identity: | 87.53 % |
Parental protein coverage: | 85.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQC |
KHVPRAVFVDLEPTVIDEVRTGTYRQ.FHPEQLITGKEDA.NNYA..HYTIGKEIIDL.LDR.RKLADQC | |
Retrocopy | KHVPRAVFVDLEPTVIDEVRTGTYRQIFHPEQLITGKEDAVNNYACSHYTIGKEIIDLILDRLRKLADQC |
Parental | TGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVELYNSILTTHTTLEHSD |
TGLQ.FLVF.SF.GGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV.E..NSILTTHTTLEHSD | |
Retrocopy | TGLQDFLVFYSFSGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVAEPCNSILTTHTTLEHSD |
Parental | CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVNLAEFQTNLVPHPRIHFPL |
CAFMVD.EAIYDICRRNL.IE..TYTNLNRLI.QIVSSITASLRFDGALNV.L.EFQ.NLVP.P.IHF.L | |
Retrocopy | CAFMVD-EAIYDICRRNLNIEPLTYTNLNRLIVQIVSSITASLRFDGALNVDLTEFQNNLVPYPHIHFSL |
Parental | ATYAPVISAEKTYQEQLSVAEITNACFEPANEMVKCDPRHGKYIACCLLYHGDVVPKDVNAAIATIKTKR |
ATYAPVISAEK.Y.EQLSVAEITNACFEPAN.MVKCDP.HGKY.ACCLLY.GDVVPKD.NA.IATIKTK. | |
Retrocopy | ATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPHHGKYMACCLLYRGDVVPKDANATIATIKTKH |
Parental | TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRALCMLSNTTASAEAWACLDHKSDLMYAKRAFVHWYV |
TIQFVDWCP..FKVGINYQPPTVV..GDLAKVQ.A.CMLSNTTA..EAWA.LDHK.DLMYAK.AFVHWY. | |
Retrocopy | TIQFVDWCPIDFKVGINYQPPTVVHSGDLAKVQ*AVCMLSNTTAIVEAWAHLDHKFDLMYAKSAFVHWYG |
Parental | GEGMEEGEFSEAREDMAALEKDYEEVGVDSVQGEG |
GEGMEEGEFSEAREDM.ALEKDY.EVGVDSV.G.G | |
Retrocopy | GEGMEEGEFSEAREDMSALEKDY-EVGVDSVGGRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020894 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004121 | 1 retrocopy | |
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Homo sapiens | ENSG00000167552 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017836 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027812 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004645 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004559 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005749 | 4 retrocopies |