Parental gene:

GCSH, ENSCPOG00000009983

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_118:44363..54376(+)


>ENSCPOG00000009983
ATGGCGCTGCGAGTGGCTGGGTGCGTCCGCGCCGCGGCCTGCAGCCTGCGCGCAGCCTCGGTGTCCTCCGCGCCCTGCGC
GATTCGGCCCTGGCGGCTGTGGGCGGGCGCCGTGCGGTCGCTGCGTACTGGATCGGCGCTGCTCGCGATGCGCAAGTTCA
CAGAGAAACACGAATGGGTAACAACAGAAAATGGTATTGGAACGGTGGGAATCAGCAACTTTGCACAGGAAGCTCTGGGA
GATGTTGTGTACTGTAGCCTGCCTGAAGTTGGGACAAAATTGAAAAAGCACGATGAGTTTGGTGCTTTGGAAAGCGTGAA
GGCCGCCAGTGAACTCTATTCTCCTCTGTCAGGGGAGGTAACTGAAATAAATGAAGCTCTTGCAGAAAACCCAGGGCTGG
TAAACAAGTCTTGTTACGAAGATGGCTGGCTGATCAAGATGACAGTGGGTGACCCTTCAGAACTAGATGAGCTCATGAGT
GAAGAAGCATATGAGAAATACGTGAAGTCGATCGAGGAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 39 .17 RPM
SRP017611_kidney 46 .80 RPM
SRP017611_brain 16 .39 RPM
SRP040447_lung 9 .89 RPM
SRP040447_skeletal_muscle 13 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008905 ortholog_one2one 1 retrogene
retro_acar_75,
Ailuropoda melanoleuca ENSAMEG00000013959 ortholog_one2one 5 retrogenes
retro_amel_1362, retro_amel_1877, retro_amel_229, retro_amel_432, retro_amel_80,
Bos taurus ENSBTAG00000006795 possible_ortholog 8 retrogenes
retro_btau_1128, retro_btau_12, retro_btau_1483, retro_btau_1543, retro_btau_1628, retro_btau_246, retro_btau_265, retro_btau_94,
Canis familiaris ENSCAFG00000020014 ortholog_one2one 5 retrogenes
retro_cfam_1249, retro_cfam_1543, retro_cfam_358, retro_cfam_618, retro_cfam_732,
Choloepus hoffmanni ENSCHOG00000002434 ortholog_one2one 37 retrogenes
retro_chof_1011, retro_chof_1019, retro_chof_1123, retro_chof_1213, retro_chof_1324, retro_chof_1410, retro_chof_1482, retro_chof_1550, retro_chof_163, retro_chof_1647, retro_chof_1659, retro_chof_1690, retro_chof_1705, retro_chof_1722, retro_chof_178, retro_chof_1781, retro_chof_1787, retro_chof_219, retro_chof_2264, retro_chof_2289, retro_chof_2319, retro_chof_2412, retro_chof_2466, retro_chof_2494, retro_chof_2632, retro_chof_2657, retro_chof_283, retro_chof_335, retro_chof_361, retro_chof_362, retro_chof_363, retro_chof_419, retro_chof_433, retro_chof_477, retro_chof_597, retro_chof_755, retro_chof_931,
Dipodomys ordii ENSDORG00000007831 ortholog_one2one 1 retrogene
retro_dord_645,
Felis catus ENSFCAG00000013038 ortholog_one2many 8 retrogenes
retro_fcat_1007, retro_fcat_1112, retro_fcat_1294, retro_fcat_1435, retro_fcat_1627, retro_fcat_1920, retro_fcat_215, retro_fcat_354,
Loxodonta africana ENSLAFG00000015586 ortholog_one2one 3 retrogenes
retro_lafr_554, retro_lafr_822, retro_lafr_900,
Myotis lucifugus ENSMLUG00000005783 ortholog_one2one 12 retrogenes
retro_mluc_1151, retro_mluc_1221, retro_mluc_1466, retro_mluc_1538, retro_mluc_1659, retro_mluc_1685, retro_mluc_2089, retro_mluc_2090, retro_mluc_2139, retro_mluc_2314, retro_mluc_2411, retro_mluc_709,
Macaca mulatta ENSMMUG00000013088 ortholog_one2one 5 retrogenes
retro_mmul_1192, retro_mmul_2202, retro_mmul_661, retro_mmul_840, retro_mmul_960,
Mustela putorius furo ENSMPUG00000009677 ortholog_one2one 4 retrogenes
retro_mputfur_1434, retro_mputfur_1492, retro_mputfur_349, retro_mputfur_809,
Mus musculus ENSMUSG00000034424 ortholog_one2one 8 retrogenes
retro_mmus_1880, retro_mmus_2144, retro_mmus_2235, retro_mmus_3062, retro_mmus_3303, retro_mmus_3459, retro_mmus_3610, retro_mmus_3703,
Nomascus leucogenys ENSNLEG00000026844 possible_ortholog 1 retrogene
retro_nleu_365,
Procavia capensis ENSPCAG00000005820 ortholog_one2one 1 retrogene
retro_pcap_207,
Pteropus vampyrus ENSPVAG00000009956 ortholog_one2one 8 retrogenes
retro_pvam_1253, retro_pvam_1474, retro_pvam_1481, retro_pvam_194, retro_pvam_552, retro_pvam_583, retro_pvam_78, retro_pvam_958,
Rattus norvegicus ENSRNOG00000011535 ortholog_one2one 6 retrogenes
retro_rnor_1217, retro_rnor_1218, retro_rnor_1400, retro_rnor_1910, retro_rnor_2691, retro_rnor_557,
Sarcophilus harrisii ENSSHAG00000005529 ortholog_one2one 1 retrogene
retro_shar_239,
Ictidomys tridecemlineatus ENSSTOG00000016433 ortholog_one2many 2 retrogenes
retro_itri_31, retro_itri_34,
Tupaia belangeri ENSTBEG00000000056 ortholog_one2one 27 retrogenes
retro_tbel_1426, retro_tbel_1716, retro_tbel_1766, retro_tbel_1846, retro_tbel_1923, retro_tbel_2026, retro_tbel_2074, retro_tbel_2168, retro_tbel_2315, retro_tbel_2426, retro_tbel_2489, retro_tbel_2515, retro_tbel_2573, retro_tbel_2769, retro_tbel_3007, retro_tbel_3025, retro_tbel_311, retro_tbel_3140, retro_tbel_3458, retro_tbel_3852, retro_tbel_3924, retro_tbel_4173, retro_tbel_4727, retro_tbel_597, retro_tbel_601, retro_tbel_609, retro_tbel_825,
Tarsius syrichta ENSTSYG00000000248 ortholog_one2one 13 retrogenes
retro_tsyr_119, retro_tsyr_1311, retro_tsyr_1367, retro_tsyr_1833, retro_tsyr_2023, retro_tsyr_2173, retro_tsyr_309, retro_tsyr_328, retro_tsyr_363, retro_tsyr_429, retro_tsyr_439, retro_tsyr_587, retro_tsyr_643,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_385 58.12 65.90
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2. retro_cpor_463 51.14 50.29
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3. retro_cpor_1240 60.56 80.92
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Download FASTA sequences of all ENSCPOG00000009983 retrocopies