RetrogeneDB ID: | retro_rnor_1218 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:26412203..26412709(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000049344 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gcsh | ||
Ensembl ID: | ENSRNOG00000011535 | ||
Aliases: | None | ||
Description: | Glycine cleavage system H protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5I0P2] |
Percent Identity: | 94.12 % |
Parental protein coverage: | 99.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SLRVVRSVRAVACSLRIALASCPPRPWAPSAAAVRSLRTGSALLSVRKFTEKHEWVTAKDGIGTVGISNF |
SLRVVRS.RAVACSLR.ALASCPPRPWAPSAAAV..LRTGSALLSV.KFTEKHEWVTAKDGIGTVGISNF | |
Retrocopy | SLRVVRSERAVACSLRTALASCPPRPWAPSAAAVCLLRTGSALLSVGKFTEKHEWVTAKDGIGTVGISNF |
Parental | AQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWL |
A.EALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAEN.GLVNKSCYEDGWL | |
Retrocopy | AKEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENRGLVNKSCYEDGWL |
Parental | IKMTL-SDPSELDELMSEEAYEKYVKSIEE |
IKMTL...PSELDELMSEEAYEKYVKSIEE | |
Retrocopy | IKMTL<ENPSELDELMSEEAYEKYVKSIEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 139 .22 RPM |
SRP017611_liver | 0 .00 RPM | 89 .83 RPM |