RetrogeneDB ID: | retro_tsyr_2023 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_8005:12099..12525(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GCSH | ||
Ensembl ID: | ENSTSYG00000000248 | ||
Aliases: | None | ||
Description: | glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208] |
Percent Identity: | 61.64 % |
Parental protein coverage: | 83.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CPPRPWGPGTG-VWT-LCMGPALLSVRKFTEKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKL |
C..R.W...T..VW..L..G..LL...K.TEKHE..T.EN.I.TVGISN..QE.LGDV.Y.SL.EVGT.L | |
Retrocopy | CFTRHWQLRTSIVWA<LHRGSTLLLICKITEKHE*MTKENCIETVGISNVVQEILGDVGYYSLLEVGTTL |
Parental | NKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMS-EEA |
NKQDE.GAL.S.KAAS.L.S.LSGE..EIN...AEN.GLVNK..YE.GWLI.MTLS.PSELD.L.S.... | |
Retrocopy | NKQDESGALKSMKAASNLCS-LSGEIIEIN*IFAENLGLVNK-FYESGWLIRMTLSRPSELDRLLS>KKE |
Parental | YEKYVK |
YE...K | |
Retrocopy | YEESIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |