RetrogeneDB ID: | retro_mmus_2235 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:37556135..37556532(-) | ||
Located in intron of: | ENSMUSG00000027722 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080723 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gcsh | ||
Ensembl ID: | ENSMUSG00000034424 | ||
Aliases: | Gcsh, 1100001L02Rik, 5730591C18Rik | ||
Description: | glycine cleavage system protein H (aminomethyl carrier) [Source:MGI Symbol;Acc:MGI:1915383] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 78.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SLRTGSALL-SVRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKA |
S..TGSALL....KFTEKHEWITTEEGIGT.GIS.FA.EAL.DVVYCSLPEVGTKLKKQEEFG.LE.VKA | |
Retrocopy | SQHTGSALL<VMHKFTEKHEWITTEEGIGTMGISKFA*EALRDVVYCSLPEVGTKLKKQEEFGTLERVKA |
Parental | ASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSEMDE-LMSEEAYEKYVKSIEE |
ASEL.SPLSGEVTEVNEALA..PGLVNKSC..DGWL.KMTLSDPSE.DE..M.EEAYE.YVKS.EE | |
Retrocopy | ASELSSPLSGEVTEVNEALAAKPGLVNKSC-*DGWLMKMTLSDPSELDE<MMIEEAYEEYVKSSEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 28 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .88 RPM |
SRP007412_heart | 0 .03 RPM | 40 .91 RPM |
SRP007412_kidney | 0 .02 RPM | 63 .89 RPM |
SRP007412_liver | 0 .00 RPM | 80 .86 RPM |
SRP007412_testis | 0 .00 RPM | 6 .91 RPM |