Parental gene:

CMC1, ENSDNOG00000018923

Aliases:None
Description:COX assembly mitochondrial protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28783]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_6642:68280..175676(+)


>ENSDNOG00000018923
GGGAGAAAGGAATGGCCCGGCTTCGCCCAGGCCGGCGCGCGCTTCCGCTCCTACTCAGTCGGGAACCTCCCGGCGGCTGC
ACGTGCGCTCGAGACCAGACCCCTCCCCTCCCCGCCCTGCCCGGGTGCAGCCGAGCGGTTGTCCCTTGCTCCGCCCGCGG
AGATGGCGCTCGACCCCGCAGAACAGCATCTTAGACATGTCGAAAAGGATGTTCTGATCCCTAAAATAATGAGAGAGAAG
GCCAGAGAGAGATGTTCTGAACAAGTTCAAGATTTTACCAAATGTTGCAAGGACTCTGGACTCCTTATGGTAGTAAAATG
CAGGAAAGAAAATTCTGCACTGAAAGAATGTCTGACTGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATG
TAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 21 .78 RPM
SRP012922_cerebellum 11 .41 RPM
SRP012922_heart 8 .12 RPM
SRP012922_kidney 15 .61 RPM
SRP012922_liver 7 .59 RPM
SRP012922_lung 10 .08 RPM
SRP012922_quadricep_muscle 7 .27 RPM
SRP012922_spleen 8 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004272 ortholog_one2one 2 retrogenes
retro_cjac_2600, retro_cjac_2653,
Homo sapiens ENSG00000187118 ortholog_one2one 4 retrogenes
retro_hsap_1372, retro_hsap_1764, retro_hsap_3229, retro_hsap_984,
Gorilla gorilla ENSGGOG00000012406 ortholog_one2one 4 retrogenes
retro_ggor_1067, retro_ggor_2196, retro_ggor_2245, retro_ggor_786,
Microcebus murinus ENSMICG00000011702 ortholog_one2one 2 retrogenes
retro_mmur_366, retro_mmur_759,
Myotis lucifugus ENSMLUG00000000044 ortholog_one2one 2 retrogenes
retro_mluc_1063, retro_mluc_759,
Nomascus leucogenys ENSNLEG00000004066 ortholog_one2one 4 retrogenes
retro_nleu_1075, retro_nleu_2763, retro_nleu_2830, retro_nleu_949,
Oryctolagus cuniculus ENSOCUG00000012793 ortholog_one2one 2 retrogenes
retro_ocun_1592, retro_ocun_1637,
Ochotona princeps ENSOPRG00000009474 ortholog_one2one 1 retrogene
retro_opri_463,
Pongo abelii ENSPPYG00000014054 ortholog_one2one 4 retrogenes
retro_pabe_1139, retro_pabe_1533, retro_pabe_2677, retro_pabe_833,
Pan troglodytes ENSPTRG00000014706 ortholog_one2one 4 retrogenes
retro_ptro_1207, retro_ptro_2181, retro_ptro_763, retro_ptro_942,
Rattus norvegicus ENSRNOG00000010149 ortholog_one2one 1 retrogene
retro_rnor_914,
Sorex araneus ENSSARG00000001629 ortholog_one2one 1 retrogene
retro_sara_186,
Tupaia belangeri ENSTBEG00000002573 ortholog_one2one 4 retrogenes
retro_tbel_3026, retro_tbel_3858, retro_tbel_4018, retro_tbel_4214,
Tarsius syrichta ENSTSYG00000011371 ortholog_one2one 2 retrogenes
retro_tsyr_1764, retro_tsyr_178,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_111 89.02 51.25
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2. retro_dnov_651 79.12 55.00
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Download FASTA sequences of all ENSDNOG00000018923 retrocopies