RetrogeneDB ID:

retro_mluc_1063

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429791:10786278..10786487(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CMC1
Ensembl ID:ENSMLUG00000000044
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1063
AAGGCCCAAGAGAGATGTTCTGAACAAGTTCAAGATTTACCGTATGTGCAAGGAATCTGGAATCCTTAGTAGTAAAATGC
TGGAAAGAAAATTCTGCATTGAAAGAATGTCCAACGGCTTACTACAATGATCCTACCTTTTATGAAGAATGCAACATGGA
ATGCCTGAAGGAAAAAGAAGCATTCAGAAAAACTGGAATTGCTATCAAG

ORF - retro_mluc_1063 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.83 %
Parental protein coverage: 70.3 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKARERCSEQVQD-FTKCCKESGMLMVVKCRKENSALKECLTSYYTDPAFYEECKMEYLKEREEFRKTGIP
KA.ERCSEQVQD.FT.C......L.VVKC.KENSALKEC.T.YY.DP.FYEEC.ME.LKE.E.FRKTGI.
RetrocopyKAQERCSEQVQD<FTVCARNLESL-VVKCWKENSALKECPTAYYNDPTFYEECNMECLKEKEAFRKTGIA
ParentalTK
.K
RetrocopyIK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1063 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 39 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000042722 retrocopies
Dasypus novemcinctus ENSDNOG000000189232 retrocopies
Homo sapiens ENSG000001871184 retrocopies
Gorilla gorilla ENSGGOG000000124064 retrocopies
Microcebus murinus ENSMICG000000117022 retrocopies
Myotis lucifugus ENSMLUG00000000044 2 retrocopies
retro_mluc_1063 , retro_mluc_759,
Nomascus leucogenys ENSNLEG000000040664 retrocopies
Oryctolagus cuniculus ENSOCUG000000127932 retrocopies
Ochotona princeps ENSOPRG000000094741 retrocopy
Pongo abelii ENSPPYG000000140544 retrocopies
Pan troglodytes ENSPTRG000000147064 retrocopies
Rattus norvegicus ENSRNOG000000101491 retrocopy
Sorex araneus ENSSARG000000016291 retrocopy
Tupaia belangeri ENSTBEG000000025734 retrocopies
Tarsius syrichta ENSTSYG000000113712 retrocopies



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