RetrogeneDB ID: | retro_tsyr_178 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_4579:4356..4617(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CMC1 | ||
Ensembl ID: | ENSTSYG00000011371 | ||
Aliases: | None | ||
Description: | COX assembly mitochondrial protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28783] |
Percent Identity: | 70.45 % |
Parental protein coverage: | 64.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LIPKIMREKTRERCSEQVQDFTKCCKDSGLLMVVKCRKENSALKECLTAYYNDPAFYEECKMEYLKEREE |
LIPK.MR...RER.SE.VQD..KC.K.SG.LMVVKC.KENSAL.ECLTAYY.DP.FYE..K.EYLK.R.. | |
Retrocopy | LIPK-MRQMARERHSE*VQDVIKCYKNSGILMVVKCWKENSALEECLTAYYHDPVFYEQ*KKEYLKGRK* |
Parental | FRKTGIPTKKRLQKLPTS |
FRK..IPTKK.LQKL..S | |
Retrocopy | FRKIEIPTKKKLQKLSRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004272 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018923 | 2 retrocopies | |
Homo sapiens | ENSG00000187118 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012406 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000011702 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000044 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004066 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012793 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000009474 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014054 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000014706 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000010149 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001629 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002573 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000011371 | 2 retrocopies |
retro_tsyr_1764, retro_tsyr_178 ,
|