RetrogeneDB ID:

retro_nleu_949

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397277.1:14309209..14309506(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CMC1
Ensembl ID:ENSNLEG00000004066
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_949
CAGCAACTAAGACATGTTGAAAAAGATGTTCTGATGCCTAACATAATGAGAAAAATGGCCAGAGAGGGGTATTCTGAACA
AGTTCAATATTTTACCAAGTGTTGCAAGAACTCTGGAATCCTTATGGTGGTAAAATACTGGAAATAAAATTCTTCATTGA
AAGACTGTCTTAACTGCTTACTATAATGATCCAGTCTTTTACAAAGAATACAAAATGGAATACCTGAAGGAATGTAAGAA
CTCAGAGAAACTGGAATTTCTACCAAGTTAAAGCTACAGAAGCTTCCCATAAGCATG

ORF - retro_nleu_949 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.29 %
Parental protein coverage: 93.4 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKSSGFLMVVKCRKENSALKEC-LTAYYNDPAFYEE
Q.LRHVEKDVL.P.IMR..A.E..SEQVQ.FTKCCK.SG.LMVVK..K.NS.LK.C.LTAYYNDP.FY.E
RetrocopyQQLRHVEKDVLMPNIMRKMAREGYSEQVQYFTKCCKNSGILMVVKYWK*NSSLKDC>LTAYYNDPVFYKE
ParentalCKMEYLKERE-EFRKTGIPTKKRLQKLPTSM
.KMEYLKE...E.R.TGI.TK..LQKLP.SM
RetrocopyYKMEYLKECK<ELRETGISTKLKLQKLPISM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_949 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 39 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000042722 retrocopies
Dasypus novemcinctus ENSDNOG000000189232 retrocopies
Homo sapiens ENSG000001871184 retrocopies
Gorilla gorilla ENSGGOG000000124064 retrocopies
Microcebus murinus ENSMICG000000117022 retrocopies
Myotis lucifugus ENSMLUG000000000442 retrocopies
Nomascus leucogenys ENSNLEG00000004066 4 retrocopies
Oryctolagus cuniculus ENSOCUG000000127932 retrocopies
Ochotona princeps ENSOPRG000000094741 retrocopy
Pongo abelii ENSPPYG000000140544 retrocopies
Pan troglodytes ENSPTRG000000147064 retrocopies
Rattus norvegicus ENSRNOG000000101491 retrocopy
Sorex araneus ENSSARG000000016291 retrocopy
Tupaia belangeri ENSTBEG000000025734 retrocopies
Tarsius syrichta ENSTSYG000000113712 retrocopies



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