RetrogeneDB ID: | retro_pabe_1139 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:92705991..92706260(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CMC1 | ||
Ensembl ID: | ENSPPYG00000014054 | ||
Aliases: | None | ||
Description: | COX assembly mitochondrial protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28783] |
Percent Identity: | 81.32 % |
Parental protein coverage: | 84.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | HLRHVEKDVLIPKIMREKAKERCSE-QVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFYEEC |
HLR.V.KDVLIP.IMREKA.ER.S..QVQDFTKCCKNSG.LM.VKC.KENSALKECLTA.YNDPAFYE.C | |
Retrocopy | HLRRVGKDVLIPQIMREKARERSSD<QVQDFTKCCKNSGILMIVKCWKENSALKECLTAHYNDPAFYE*C |
Parental | KMEYLKEREEFRKTGIPAKKR |
K.EYLKE.EEFRKTG...KKR | |
Retrocopy | KVEYLKEKEEFRKTGTSTKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 5 .39 RPM |
SRP007412_kidney | 0 .03 RPM | 5 .34 RPM |
SRP007412_liver | 0 .00 RPM | 6 .73 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1372 |
Pan troglodytes | retro_ptro_942 |
Gorilla gorilla | retro_ggor_1067 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004272 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018923 | 2 retrocopies | |
Homo sapiens | ENSG00000187118 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012406 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000011702 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000044 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004066 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012793 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000009474 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014054 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000014706 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000010149 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001629 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002573 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000011371 | 2 retrocopies |