Parental gene: | CMC1, ENSPPYG00000014054 |
| Aliases: | None |
| Description: | COX assembly mitochondrial protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28783] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 3:118813200..118897704(-) |
>ENSPPYG00000014054
ATGGCTCTCGACCCCGCAGACCAGCATCTCAGACATGTTGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGC
CAAAGAGAGGTGTTCTGAACAAGTTCAAGATTTTACCAAATGTTGCAAGAACTCTGGAGTTCTTATGGTAGTAAAATGCC
GGAAAGAAAATTCTGCATTGAAAGAATGTCTAACTGCTTACTATAATGATCCAGCCTTTTATGAAGAATGCAAAATGGAA
TACCTGAAGGAAAGGGAAGAATTCAGAAAAACTGGAATTCCTGCAAAGAAAAGGCTACAGAAGCTTCCAACAAGCATGTA
G
ATGGCTCTCGACCCCGCAGACCAGCATCTCAGACATGTTGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGC
CAAAGAGAGGTGTTCTGAACAAGTTCAAGATTTTACCAAATGTTGCAAGAACTCTGGAGTTCTTATGGTAGTAAAATGCC
GGAAAGAAAATTCTGCATTGAAAGAATGTCTAACTGCTTACTATAATGATCCAGCCTTTTATGAAGAATGCAAAATGGAA
TACCTGAAGGAAAGGGAAGAATTCAGAAAAACTGGAATTCCTGCAAAGAAAAGGCTACAGAAGCTTCCAACAAGCATGTA
G
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .43 RPM |
| SRP007412_cerebellum | 6 .20 RPM |
| SRP007412_heart | 5 .39 RPM |
| SRP007412_kidney | 5 .34 RPM |
| SRP007412_liver | 6 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004272 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000018923 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000187118 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012406 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000011702 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000044 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004066 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000012793 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000009474 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014706 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010149 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000001629 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000002573 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011371 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_833 | 64.89 | 88.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1139 | 81.32 | 84.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1533 | 81.82 | 72.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2677 | 71.84 | 95.28 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000014054 retrocopies