Parental gene:

RPS10, ENSFCAG00000015355

Aliases:None
Description:ribosomal protein S10 [Source:HGNC Symbol;Acc:10383]
Organism:Cat (Felis catus)
Coordinates:B2:35882982..35888936(-)


>ENSFCAG00000015355
ATGTTGATGCCCAAGAAGAACCGAATTGCCATTTATGAACTCCTTTTCAAGGAGGGAGTGATGGTGGCCAAGAAGGATGT
CCACATGCCTAAACACCCTGAGCTGGCAGACAAGAATGTGCCCAATCTTCACGTCATGAAAGCCATGCAGTCTCTCAAAT
CACGAGGCTACGTAAAGGAACAGTTTGCCTGGAGACATTTCTATTGGTACCTTACCAACGAGGGTATCCAGTATCTTCGT
GATTACCTCCACCTGCCCCCTGAGATCGTGCCTGCCACTCTGCGTCGCAGCCGTCCTGAGACCGGCAGGCCGCGGCCCAA
AGGTCTGGAGGGAGAGCGGCCTGCAAGACTCACACGAGGGGAAGCTGACAGAGACACCTACAGACGAAGCGCTGTGCCCC
CTGGTGCCGACAAGAAAGCTGAGGCCGGGGCTGGGTCAGCAACTGAATTCCAGTTTAGAGGCGGATTTGGTCGTGGACGT
GGTCAGCCACCTCAGTAA

Library Parental gene expression (RPM)
SRP017611_liver 126 .16 RPM
SRP017611_kidney 226 .11 RPM
SRP017611_brain 78 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001047 ortholog_one2one 4 retrogenes
retro_amel_1408, retro_amel_1706, retro_amel_446, retro_amel_890,
Canis familiaris ENSCAFG00000001214 ortholog_one2one 2 retrogenes
retro_cfam_1, retro_cfam_92,
Callithrix jacchus ENSCJAG00000015250 possible_ortholog 4 retrogenes
retro_cjac_215, retro_cjac_296, retro_cjac_325, retro_cjac_63,
Latimeria chalumnae ENSLACG00000017219 ortholog_one2one 1 retrogene
retro_lcha_26,
Loxodonta africana ENSLAFG00000008539 ortholog_one2one 1 retrogene
retro_lafr_756,
Macaca mulatta ENSMMUG00000000267 ortholog_one2one 2 retrogenes
retro_mmul_332, retro_mmul_555,
Monodelphis domestica ENSMODG00000013929 ortholog_one2one 2 retrogenes
retro_mdom_1889, retro_mdom_437,
Mustela putorius furo ENSMPUG00000003117 ortholog_one2one 3 retrogenes
retro_mputfur_1347, retro_mputfur_1533, retro_mputfur_1579,
Mus musculus ENSMUSG00000052146 possible_ortholog 9 retrogenes
retro_mmus_1376, retro_mmus_1500, retro_mmus_1831, retro_mmus_2431, retro_mmus_2551, retro_mmus_2708, retro_mmus_3651, retro_mmus_5, retro_mmus_858,
Otolemur garnettii ENSOGAG00000001365 ortholog_one2one 5 retrogenes
retro_ogar_2166, retro_ogar_2314, retro_ogar_2553, retro_ogar_415, retro_ogar_873,
Pongo abelii ENSPPYG00000016516 possible_ortholog 2 retrogenes
retro_pabe_2319, retro_pabe_97,
Rattus norvegicus ENSRNOG00000000490 possible_ortholog 4 retrogenes
retro_rnor_169, retro_rnor_224, retro_rnor_359, retro_rnor_74,
Sarcophilus harrisii ENSSHAG00000000731 ortholog_one2one 3 retrogenes
retro_shar_243, retro_shar_334, retro_shar_724,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1443 67.72 94.55
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2. retro_fcat_1681 75.15 99.39
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3. retro_fcat_1757 70.30 100.00
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Download FASTA sequences of all ENSFCAG00000015355 retrocopies