RetrogeneDB ID: | retro_cfam_92 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:33555334..33555832(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008935 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSCAFG00000001214 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S10 (RPS10), mRNA. [Source:RefSeq mRNA;Acc:NM_001252045] |
Percent Identity: | 99.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFY.Y | |
Retrocopy | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYCY |
Parental | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA |
LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA | |
Retrocopy | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA |
Parental | EAGAGSATEFQFRGGFGRGRGQPPQ |
EAGAGSATEFQFRGGFGRGRGQPPQ | |
Retrocopy | EAGAGSATEFQFRGGFGRGRGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .55 RPM | 176 .65 RPM |
SRP017611_brain | 0 .48 RPM | 49 .14 RPM |
SRP017611_kidney | 2 .51 RPM | 282 .51 RPM |
SRP017611_liver | 0 .36 RPM | 59 .68 RPM |