RetrogeneDB ID: | retro_mmul_555 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:168974525..168975021(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000023093 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSMMUG00000000267 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
MLMPKKN.IAIYELLFKEGVMVA.KDVHMPKHPELADKNVPNL.VMKAMQSLKSRGYVKEQFAWR.FYWY | |
Retrocopy | MLMPKKNWIAIYELLFKEGVMVAEKDVHMPKHPELADKNVPNLRVMKAMQSLKSRGYVKEQFAWRRFYWY |
Parental | LTNE-GIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYR-RSASVSSGAD |
LTNE.GIQYLRDYLHLPPEIVPA.LR.S.PETGRP.PKGLEGERPARLT.GEADRDTY......V..GA. | |
Retrocopy | LTNE<GIQYLRDYLHLPPEIVPAILRHSCPETGRPPPKGLEGERPARLTGGEADRDTYK<KQSAVPPGAN |
Parental | KKAEAGAGSATEFQFRGGFGRGRGQPPQ |
KKAEAGAG.ATEFQFR..FG.G.GQPPQ | |
Retrocopy | KKAEAGAGAATEFQFRDRFGCGCGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 28 .68 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 103 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 49 .01 RPM |
SRP007412_heart | 0 .00 RPM | 68 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 55 .87 RPM |
SRP007412_liver | 0 .00 RPM | 101 .06 RPM |
SRP007412_testis | 0 .00 RPM | 60 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_289 |
Pan troglodytes | retro_ptro_238 |