RetrogeneDB ID: | retro_mmul_332 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:44333290..44333788(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000018935 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSMMUG00000000267 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
MLMPKKNRIAIYELLFK.GVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSL.SR.YVKEQFAWRHFYWY | |
Retrocopy | MLMPKKNRIAIYELLFKGGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLNSRSYVKEQFAWRHFYWY |
Parental | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSASVSSGADKK |
LTNEG.QYLRDYLHLP.EIVPATLR.S.PE..RP.PKGLEGE.PARLTRGEADR.TY.RSA.V..GADKK | |
Retrocopy | LTNEGVQYLRDYLHLPLEIVPATLRCSHPEADRPCPKGLEGEQPARLTRGEADRHTYKRSA-VPPGADKK |
Parental | AEAGAGSATEFQFRGGFGRGRGQPPQ |
AEAGAGSATEFQFR.GFGRGRGQPPQ | |
Retrocopy | AEAGAGSATEFQFRDGFGRGRGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 28 .68 RPM |
SRP007412_brain_prefrontal_cortex | 1 .03 RPM | 103 .37 RPM |
SRP007412_cerebellum | 0 .32 RPM | 49 .01 RPM |
SRP007412_heart | 0 .18 RPM | 68 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 55 .87 RPM |
SRP007412_liver | 0 .08 RPM | 101 .06 RPM |
SRP007412_testis | 8 .07 RPM | 60 .35 RPM |