RetrogeneDB - Parental gene ENSPPYG00000016516 details

							
>ENSPPYG00000016516
ATGTTGATGCCTAAGAAGAACCGGATTGCCATTTATGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGT

CCACATGCCTAAGCACCCGGAGCTGGCAGACAAGAATGTGCCCAACCTTCATGTCATGAAGGCCATGCAGTCTCTCAAGT

CCCGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAATGAGGGTATCCAATATCTCCGC

GATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAA

AGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCAC

CTGGTGCTGACAAGAAAGCTGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTTGTCCTCATAGCACATGATTGCGCT

CAGATAATGTCATTTATAAAAAGGAAGCATGTACAGTAG

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	21 .45 RPM
SRP007412_cerebellum	16 .66 RPM
SRP007412_heart	19 .87 RPM
SRP007412_kidney	43 .49 RPM
SRP007412_liver	39 .41 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000001047	possible_ortholog	4 retrogenes	retro_amel_1408, retro_amel_1706, retro_amel_446, retro_amel_890,
Bos taurus	ENSBTAG00000015598	possible_ortholog	3 retrogenes	retro_btau_1334, retro_btau_844, retro_btau_989,
Canis familiaris	ENSCAFG00000001214	possible_ortholog	2 retrogenes	retro_cfam_1, retro_cfam_92,
Callithrix jacchus	ENSCJAG00000015250	possible_ortholog	4 retrogenes	retro_cjac_215, retro_cjac_296, retro_cjac_325, retro_cjac_63,
Cavia porcellus	ENSCPOG00000008613	possible_ortholog	2 retrogenes	retro_cpor_1245, retro_cpor_345,
Dasypus novemcinctus	ENSDNOG00000011670	ortholog_one2one	2 retrogenes	retro_dnov_2303, retro_dnov_2558,
Dipodomys ordii	ENSDORG00000012060	ortholog_one2one	6 retrogenes	retro_dord_225, retro_dord_494, retro_dord_641, retro_dord_73, retro_dord_74, retro_dord_767,
Equus caballus	ENSECAG00000006430	possible_ortholog	1 retrogene	retro_ecab_198,
Erinaceus europaeus	ENSEEUG00000003376	possible_ortholog	2 retrogenes	retro_eeur_367, retro_eeur_647,
Felis catus	ENSFCAG00000015355	possible_ortholog	3 retrogenes	retro_fcat_1443, retro_fcat_1681, retro_fcat_1757,
Homo sapiens	ENSG00000124614	possible_ortholog	24 retrogenes	retro_hsap_1509, retro_hsap_1628, retro_hsap_1630, retro_hsap_1657, retro_hsap_1923, retro_hsap_2003, retro_hsap_2113, retro_hsap_229, retro_hsap_2415, retro_hsap_2573, retro_hsap_2574, retro_hsap_2830, retro_hsap_289, retro_hsap_3007, retro_hsap_3170, retro_hsap_3243, retro_hsap_3436, retro_hsap_3454, retro_hsap_3720, retro_hsap_4114, retro_hsap_4190, retro_hsap_460, retro_hsap_869, retro_hsap_992,
Latimeria chalumnae	ENSLACG00000017219	ortholog_one2many	1 retrogene	retro_lcha_26,
Loxodonta africana	ENSLAFG00000008539	ortholog_one2many	1 retrogene	retro_lafr_756,
Myotis lucifugus	ENSMLUG00000007495	possible_ortholog	2 retrogenes	retro_mluc_1143, retro_mluc_2128,
Macaca mulatta	ENSMMUG00000000267	possible_ortholog	2 retrogenes	retro_mmul_332, retro_mmul_555,
Monodelphis domestica	ENSMODG00000013929	ortholog_one2many	2 retrogenes	retro_mdom_1889, retro_mdom_437,
Mustela putorius furo	ENSMPUG00000003117	possible_ortholog	3 retrogenes	retro_mputfur_1347, retro_mputfur_1533, retro_mputfur_1579,
Mus musculus	ENSMUSG00000052146	possible_ortholog	9 retrogenes	retro_mmus_1376, retro_mmus_1500, retro_mmus_1831, retro_mmus_2431, retro_mmus_2551, retro_mmus_2708, retro_mmus_3651, retro_mmus_5, retro_mmus_858,
Nomascus leucogenys	ENSNLEG00000008336	ortholog_one2one	24 retrogenes	retro_nleu_1064, retro_nleu_1206, retro_nleu_1217, retro_nleu_1366, retro_nleu_1463, retro_nleu_1496, retro_nleu_165, retro_nleu_1694, retro_nleu_1748, retro_nleu_1969, retro_nleu_2120, retro_nleu_2452, retro_nleu_2678, retro_nleu_2791, retro_nleu_2833, retro_nleu_2834, retro_nleu_2950, retro_nleu_2955, retro_nleu_3021, retro_nleu_3047, retro_nleu_3052, retro_nleu_579, retro_nleu_850, retro_nleu_882,
Oryctolagus cuniculus	ENSOCUG00000011373	possible_ortholog	2 retrogenes	retro_ocun_250, retro_ocun_874,
Otolemur garnettii	ENSOGAG00000001365	possible_ortholog	5 retrogenes	retro_ogar_2166, retro_ogar_2314, retro_ogar_2553, retro_ogar_415, retro_ogar_873,
Ochotona princeps	ENSOPRG00000002693	ortholog_one2one	2 retrogenes	retro_opri_297, retro_opri_800,
Procavia capensis	ENSPCAG00000012795	ortholog_one2one	1 retrogene	retro_pcap_309,
Pan troglodytes	ENSPTRG00000018063	ortholog_one2one	26 retrogenes	retro_ptro_1021, retro_ptro_1090, retro_ptro_1092, retro_ptro_1126, retro_ptro_1160, retro_ptro_1287, retro_ptro_1335, retro_ptro_1391, retro_ptro_1497, retro_ptro_1502, retro_ptro_1503, retro_ptro_1788, retro_ptro_1918, retro_ptro_199, retro_ptro_2192, retro_ptro_2330, retro_ptro_2342, retro_ptro_238, retro_ptro_2519, retro_ptro_2793, retro_ptro_2797, retro_ptro_2919, retro_ptro_3051, retro_ptro_3078, retro_ptro_347, retro_ptro_603,
Rattus norvegicus	ENSRNOG00000000490	possible_ortholog	4 retrogenes	retro_rnor_169, retro_rnor_224, retro_rnor_359, retro_rnor_74,
Sarcophilus harrisii	ENSSHAG00000000731	ortholog_one2many	3 retrogenes	retro_shar_243, retro_shar_334, retro_shar_724,
Ictidomys tridecemlineatus	ENSSTOG00000013486	possible_ortholog	5 retrogenes	retro_itri_1448, retro_itri_1515, retro_itri_230, retro_itri_787, retro_itri_963,
Tupaia belangeri	ENSTBEG00000001492	ortholog_one2one	16 retrogenes	retro_tbel_1302, retro_tbel_175, retro_tbel_1775, retro_tbel_2039, retro_tbel_2061, retro_tbel_2062, retro_tbel_2766, retro_tbel_2814, retro_tbel_314, retro_tbel_3359, retro_tbel_483, retro_tbel_522, retro_tbel_667, retro_tbel_980, retro_tbel_981, retro_tbel_986,
Tursiops truncatus	ENSTTRG00000015064	ortholog_one2one	2 retrogenes	retro_ttru_1089, retro_ttru_1211,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_97	92.76	88.37	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_2319	87.80	71.51	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000016516 retrocopies

Parental gene:	ENSPPYG00000016516
Aliases:	None
Description:	None
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	6:34425878..34431524(-)

Parental gene:

ENSPPYG00000016516