RetrogeneDB ID: | retro_rnor_169 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:23394876..23395380(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000049099 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps10 | ||
Ensembl ID: | ENSRNOG00000000490 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S10 [Source:UniProtKB/Swiss-Prot;Acc:P63326] |
Percent Identity: | 96.32 % |
Parental protein coverage: | 96.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY | |
Retrocopy | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
Parental | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRGEADRDTYRRSAVPPGADKKA |
LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRGEADRDTYRR.AVPPGADKKA | |
Retrocopy | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRGEADRDTYRRNAVPPGADKKA |
Parental | EAGAGSAT---EFQFRGGFGRGR |
EAGAGS.T...EFQFRGGFGR.R | |
Retrocopy | EAGAGSTTATTEFQFRGGFGRER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .80 RPM |
SRP017611_liver | 0 .00 RPM | 37 .79 RPM |